FastQCFastQC Report
Sat 31 Dec 2022
SRR5845793.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845793.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96617
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT3150.32602958071560906No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC2220.2297732283138578No Hit
GAAATGGGAGAGAAGCTCGTGGTGGGGGAAATCTGGAATTTGTCTAAATATT1450.1500771085833756No Hit
TCTCATGGGCATCTATGTGGGAAAGCATTCACTGAATCTTCTGTGCTTAAAC1450.1500771085833756No Hit
GTAGTTGGGCCTAAATAAATGAGCTGTTGGAAGAAAAGAATCACAGTACTTT1350.13972696316383246No Hit
AGCGGTGGGAAGCTGCTGGAGAGGATGACGAAATGGGGCGAGGAGGCAAGAT1320.1366219195379695No Hit
GCTTGCGGGTTGTTACTATAATCATAAATTGTTACATTCATCATTGCCTTTC1260.13041183228624362No Hit
GATTTGGGGTAGGGAATTCCAGATGCCCAGAGTCAATGTTACCAACATGGCA1180.12213171595060911No Hit
GAAAAGGGGATGTGAAAACCTCCTTAGCTGCGACCACATTCTTTCATTTTGT1180.12213171595060911No Hit
CATGCAGGGAAGAGGAGGAAGAGGAAGATGAAGAAGAGTCAGAGTCCGAGGC1150.11902667232474616No Hit
GTTGACGGGCAATACATTTTTATTTAGTGGTTATATTGTTTTGCCAATACTG1140.11799165778279186No Hit
AATGATGGGGGAGGTTGTCCCCACCCAAGGCTTGGCAGTAGAGTGCATCTCT1140.11799165778279186No Hit
CTTATAGGGATGTAAATGTTTACTGGTATAAACTTCCCTCTTTGTATGGCTT1140.11799165778279186No Hit
TACATGAGGGGGACCAAAAAGAGTTTTTGTGGATTTGACCCAAACTGAGACA1140.11799165778279186No Hit
ATGCTGGGGGGCATTTCTGGAAATGATTATTAATCCACAAAGAAGAACTCTG1110.1148866141569289No Hit
AGAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1100.1138515996149746No Hit
GTCCCAGGGACATCGGAGAGTTGGTAGATAACTGTCTGAAAAGATAGTTGTT1100.1138515996149746No Hit
AAAGCAGGGATCTTTTAACCAACTGAACAATACACCAAAAGCAGCCTAGGGA1100.1138515996149746No Hit
CTACACGGGATGAACATGATATCATGGAATTTCAGATCCTGTATATTTTTGG1090.11281658507302028No Hit
AGTTTTGGGGTGTAGTACTAGATCTGTATCTCTTGTCTGAATTAAACATTTT1090.11281658507302028No Hit
TTATCAGGGTCTCACAACGGGATTTGACAAAGGTGCCAAGAACATACACTGG1090.11281658507302028No Hit
GTCAGCGGGACACTTGCAGAAATTAATGCAAACCGAGCTGATGCAGAGGAGG1090.11281658507302028No Hit
GTATGGGGAATCTAGAAAAGGACAGAAAAAAAATCAGAAAAACAAGCCAGGT1080.11178157053106595No Hit
ACCTGAGGGCACTGTTTGCAACTTGGGATTAGTAAATATTTTAATTGTTTAA1070.11074655598911165No Hit
GCACCCAAAATTATTCAAATTGATCAACAAATTCAATAAAGTTGCAGGATAC1070.11074655598911165No Hit
TGTCCAGGGAACTCGGGATTCTAAGAAAGGGAGACAGATGGCGGGGGGAGAC1060.10971154144715732No Hit
GCTACAGGGGGAAAAGTTCATCTGGTTGAGGAAAGATTGGATCTTGGTTTGT1050.10867652690520302No Hit
ATCTAAGGGGGCTCAGGGCTCCGGGAGCGAGATGAAGAGGAAGAGGCAGCCC1040.10764151236324872No Hit
TATAATGGGTGATTTCTAAGTTCCTTTACATGTCTGGAAACTTTGGTCACTT1030.10660649782129439No Hit
GCACTTGGGAGCCCGTTCCCAATCAGCTCGTACTTACTTGGAGAGACATATG1030.10660649782129439No Hit
TCTAAGGGGGGGTCCAAGGTGATTTTACAGAAGAAAAAAACAACTCAAGCAT1030.10660649782129439No Hit
GCATCGGGGCAGTGATTCTGAATTAAAAGGATAATGTTTTGCAATGTTCAAG1020.10557148327934007No Hit
GTCAGTGGGACCATAAGCAATCCCTTGCCTTAACTCATCACCCTTTTTCACT1010.10453646873738576No Hit
CATCCTGGGGGAGTACAGTGGCTCAATCATAGCTCACTGTGCCCTCAGCCTT1010.10453646873738576No Hit
AACCTGGGGAAGCAGAATAGAAAGCAGTTGAAAAATATTCACCAGAAAAATT1010.10453646873738576No Hit
CTATGAAGGGCAACTGTAAGAGCAGACTTTCAATGTTAGCAATTAAGCTGTT1000.10350145419543144No Hit
AGATAAGGGACAGTAGCTGCAGAATACAAGAAACTTTGTGGTGAAAATGATA1000.10350145419543144No Hit
TCTTTTGGGGAAACAACCCAAATTATTCATCAACGGATGTATTAACAAATTG990.10246643965347714No Hit
ACGAACGGGCATTTGTCATTTTTGGAAGTTGGCATATATGATTTAGGGAAAT990.10246643965347714No Hit
GTATAGGGGGGGGATCGACTGTCTCAAGGCCACCTGAGATATGGCTTCTGTT990.10246643965347714No Hit
CAACCGGGGCTTGCAGAGCCGGCGCCGGAGGAGACGCACGCAGCTGACTTTG990.10246643965347714No Hit
TTCTCTGGGATGACACAAGGGAGAGGCGATGAAGATAATCTATAGAGATTTT990.10246643965347714No Hit
TTGATGGGGCTAGCCAGGGCACCCTAGTAGGCTCCCTTCCCCTACTCATCGC990.10246643965347714No Hit
ATCTAGGGGCTCCCAGCAAAGAAAAGCCTGGGATTCAGTGGCTTCCCTGCTG990.10246643965347714No Hit
TTTACTGGGAAATATTCTGAATCCTGGTAATTAAAAGTTTGGGTGTATTTTC980.10143142511152281No Hit
CATCTGGGGCTAGAATTTATTCCTCTTCTAACTGAAAGTTTGTACCCTTTCA980.10143142511152281No Hit
ACAAGAGGGGTATGAATTCAGATTTAATCAGACGATCACCAGAGCTTGAAAA980.10143142511152281No Hit
GTGTGTGGGGCAGACTTGCTTGCACATATTTGAAATTCTCGCTTCTAGTTTG980.10143142511152281No Hit
TCATTGGGGACTTTCAGAAAATTTAAATAAAAGTCAAAGAACTGATTTTTTT970.10039641056956851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)