FastQCFastQC Report
Sat 31 Dec 2022
SRR5845776.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845776.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168134
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGCCGTCT8380.49841198091998046No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAATCCCATCTCGTATGC6510.3871911689485767No Hit
AGCCAGGTTTACAAACTCAGACCCTTTTAAAAGTTGTTTAAATTGTTTTGTT2150.12787419558209523No Hit
GCGTTTGGGAGTTACAGATAATGTAATAAAGGTTTAACTTAAAAATTTTTTT2120.12608990448094973No Hit
AATTGAGGGGATCTGAAGCGGGGCATGATTCCATTTCTAGTATAGGATCCTT1930.11478939417369478No Hit
TGTTACGGGGGACTGGGAAATGTCAGCCGCTGGACTGTAGACGGATTTTCCT1890.11241033937216743No Hit
ACATGTGGGAAGAAAATTGGATGCAAGACAATGGAGAAACTTTAAAACTAAA1880.1118155756717856No Hit
TAACTAGGGATTACTTATTACCTCATTTACATTAACCCACTTTCTCACTGCA1870.11122081197140377No Hit
TCGCTGGGGGGTATATTCACGTTGTTGATCAACCGTAATTACCATCCATCTC1840.10943652087025825No Hit
TACTACGGGCTGCTCGGAACTATCAGTGTGACTGGGCAACTCACATCACCTT1830.1088417571698764No Hit
TGCACAGGGAGAATAGTGATTTTAAAAGTAAAAATAAAAATAAACCTTACTT1820.10824699346949458No Hit
AAAGACGGGATATGTGCTTCACAGAGTTCGTGTCAGGCTCAAAGGAGATATG1820.10824699346949458No Hit
ACTTTCGGGGGGCCCAGGAAATATGGGCTGGAAATGCAAATATAATTGAAGT1810.10765222976911273No Hit
ACTCGCGGGTGACACTAATACATGAAGCACATTCCAGAATGATACTCCAGAT1810.10765222976911273No Hit
TACTAGGGGCAATTCTGATTCTGAAATAGGATCAGGCTTTTACTACAACAGC1800.1070574660687309No Hit
TTGCCCGGGAAATCCATCCTTTTTAAAACTTATTTAAACAAAAAATGAAACG1790.10646270236834905No Hit
ATCTCTGGGAACAAGATTCATTGCATAAAAGTTTCAGATTATTTTGCAGCAT1790.10646270236834905No Hit
GCGTGAGGGCATCAATTATATTAAAGCTCGACCACATCAATCCAGACTATTA1780.1058679386679672No Hit
AAATGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1770.10527317496758538No Hit
ACAAATGGGCTGGAAGATATTAATTCTGTTTTGTAATCTACTAGATTTCAGT1760.10467841126720354No Hit
CTTATCCAGGGAATACATGAATTGTGGCCAAACCTGCATTGCACCCGACTAT1760.10467841126720354No Hit
TGTTACGGGAATTGTTTCTGCGTTCATAAGAATCATTTTATGTATCAAAAAT1750.10408364756682172No Hit
AAAAATAGGGAAGCATTAACCAACTGAAACCTTTAATTAAAATTCACATAGA1750.10408364756682172No Hit
CGCTTAGGGAAGATGATGATGAAGAAGAAGAGGACAATGAATCTCGTTCTTG1740.10348888386643987No Hit
TATAGCGGATTGAGATTTAATAATATAAACTTGTTATTTGGGAATATAAGGT1740.10348888386643987No Hit
GAATAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1730.10289412016605802No Hit
AAATTTGGGCTCTGCCACATGTCAGCAAATTTCTTTCCACCAGTCTTATAGC1730.10289412016605802No Hit
TGCAAGGATAGGAAGGCTGTTCAGTAAATCCATCCAAGAGATAACATTTCCT1730.10289412016605802No Hit
AGCAAGAGGATGGTGTAAGGAGTATGCCCAGCCCCTGAGGGGAGAGATGCAT1730.10289412016605802No Hit
TTGTTGGGGATAGTTTCACTGCCCTAAAAATCCCCTGTGCTTTCTCTGTTCA1710.10170459276529434No Hit
TTCAGGGGGAGTGAGTCATCCGTCCAGAAGGCGGGGAGAGCAGCAGCGGCCC1700.10110982906491252No Hit
AATTAAGGGAACGCGGCTCCCAGCCACACCAAGTTCAGGTGAGCCCCACTTG1700.10110982906491252No Hit
TTTGTGGGGGTGATCAAGTGTCTTCCATCTTCACTGAGATCAAAATTTAAAA1690.10051506536453067No Hit
TAAGCCGGGATAACTAAACATTGATTGCCTTCCATGTGGTAGTCATATCACA1690.10051506536453067No Hit
CAGACAGGGGTGATAGGGTGTTTGATTCTATACTGAAAAGTTTTAACTGAAG1690.10051506536453067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)