FastQCFastQC Report
Sat 31 Dec 2022
SRR5845748.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845748.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences306489
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT15990.5217152981020526No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC15340.5005073591548147No Hit
GCCAGTGGGTATGTTTTCAGTTGTCTTGGGCAAACATCTGGGAATAGAAATG4200.13703591319753727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)