FastQCFastQC Report
Sat 31 Dec 2022
SRR5845741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198703
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC8730.43934917942859447No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT8530.4292839061312613No Hit
AATGTCGGGCGATCTTGTCCGGGGAAGGTTTATTTGTAGAATAACATGAAAA2200.11071800627066528No Hit
TGTATAGGGGTTACAACAAATTAGCAGAATGCTGAGAGAATAAATGGTGATA2180.10971147894093196No Hit
TAAATCGGGGGTGTGAGGCACCATGCCCAGCCCCACCAATTATTATTAAATA2120.10669189695173198No Hit
GCAACAGGGTAGCCTCCCTACTTCAGGAGCCAGTTCACTTTTTGGCTCTAGT2080.10467884229226534No Hit
GCGTACGGGGTATTCAAGTACACAAGTACTTTTTCTCCATGATCAATTCTGC2030.10216252396793205No Hit
CGGGCTGGGCCCGGGAGCAGTCCCACAAGGTCTACGTCCAGCACCTGCTAAA2000.10065273297333206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)