FastQCFastQC Report
Sat 31 Dec 2022
SRR5845740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198511
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT8970.4518641284362076No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC8000.40300033751278264No Hit
CGGGCTGGGCCCGGGAGCAGTCCCACAAGGTCTACGTCCAGCACCTGCTAAA2150.10830634070656034No Hit
TGTATAGGGGTTACAACAAATTAGCAGAATGCTGAGAGAATAAATGGTGATA2130.10729883986277837No Hit
TGCGTAGGGGTGTGATGGAAGTTGGCTGTGTCCCCGTTAAGTTCATTTCCAG2040.10276508606575957No Hit
GCAACAGGGTAGCCTCCCTACTTCAGGAGCCAGTTCACTTTTTGGCTCTAGT2010.10125383480008665No Hit
GCGTACGGGGTATTCAAGTACACAAGTACTTTTTCTCCATGATCAATTCTGC2000.10075008437819566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)