FastQCFastQC Report
Sat 31 Dec 2022
SRR5845739.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845739.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196496
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC9070.46158700431560945No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT8210.4178202100806124No Hit
TGTATAGGGGTTACAACAAATTAGCAGAATGCTGAGAGAATAAATGGTGATA2740.13944304209754907No Hit
TGCGTAGGGGTGTGATGGAAGTTGGCTGTGTCCCCGTTAAGTTCATTTCCAG2180.11094373422359742No Hit
GCAACAGGGTAGCCTCCCTACTTCAGGAGCCAGTTCACTTTTTGGCTCTAGT2170.11043481801156257No Hit
TTGCGTGGGTTATGGAATCATGTGTTGGATAGGTTCTTAAGACCTGTTTCCT2160.10992590179952774No Hit
TGTGGTCGGGGCAGTTGACTTTGTAGACTGGGTGGCAGACTAAAGAAGAAAT2030.10330999104307466No Hit
ATTTATGGGGTGATTTTCTAAAGTTCCACTTTTTAATGCTTGAGTTTGCCTT2030.10330999104307466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)