FastQCFastQC Report
Sat 31 Dec 2022
SRR5845737.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845737.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141602
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT13140.9279529950141948No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC11840.8361463821132471No Hit
GTGCTGGGATCCTAGCACTACAGGTGCACACCACTGCGCCTGGCTTTTTTTT2490.175844973941046No Hit
TCTTGTGGGAGAATAAAGAAACCTAATTAAATAATAAAAGCCTAGAAAAGGA1810.12782305334670413No Hit
TTGTACGGGGGTGATAGAAGTATTGCTAGAAGCCAGTCTTGAATTTTCTTGG1770.12499823448821346No Hit
TGTAAGGGGGAGAAGCAGACGGTGATGTGGTTAATGAAAAGAAGAGAACTCC1710.12076100620047739No Hit
GTCTTGGGGCTGGGTAAATAATGAAATTAAGGCAGAAATCAAGAAGTTATTT1690.11934859677123204No Hit
AGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGA1680.11864239205660937No Hit
GCAGTTGGGAGGCCGGGGCCGGCGGCGGAACAGCTTGGGACCCGAAACGCCT1660.11722998262736402No Hit
CAGACTGGGTACATATGTAACAAACCTGCACATTGTGCACATGTACCCCAAA1640.11581757319811867No Hit
CTACCAGGGCTCTTAAGATGCGAGTCTGCTGACGCTCCCAGCTGGATAAAAA1620.11440516376887333No Hit
AAACTCGGGAGGAGTTAGTTAGAAAGGTCTTATTGATTTTACTTCTACTTTT1610.11369895905425065No Hit
GCACAGGGACTCTTGCCAATGAAACAGACTTTCCCGAGAATAGACTCATGAG1600.11299275433962798No Hit
TCTCCTGGAACTCACTTTTGAGAGTATTTTTCTCTAACCCATGTGGATCTAA1600.11299275433962798No Hit
CTTTTAGGGATGCTCAGCACATCGATGAGATGCACTGAAAACTGCAACACCT1580.11158034491038263No Hit
GCTACGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1530.10804932133726924No Hit
GTAGCCATAAAGTGTTCTTTTCTCTGCACCATTTCCAAGAGCTCATTTTCTT1520.10734311662264656No Hit
GAATAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1470.1038120930495332No Hit
TTCTGCGGGGAGCAAGGCCCGGCGTGAGGAGGAGGAGGAGGGTGAGAGCGAG1470.1038120930495332No Hit
CGTTATGGGGGGTCCTGTGGGGCCCCCACAATGGTCCCAAACAGCTGCCTCT1450.10239968362028785No Hit
ACGCCAGGGAACCAGTCTAAGGAAACCTGCATACTGAATCTTTAAAGAATTA1430.1009872741910425No Hit
AGTTATGGGATCAGTAGGATGGTTCTTTAAAAATGCAACCTGTTTCAAATTT1420.10028106947641982No Hit
GGAGCTCCTCATGTACTCCCATGACAACATCATCTGTGGCATCACCTCTGTT1420.10028106947641982No Hit
GAATTTGGGTAGATAGCACTGAGGCACAAAGAAGTTAGGGAACTTGCTCATG1420.10028106947641982No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)