FastQCFastQC Report
Sat 31 Dec 2022
SRR5845736.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845736.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139105
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT13070.9395780166061608No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC11290.8116171237554365No Hit
GTGCTGGGATCCTAGCACTACAGGTGCACACCACTGCGCCTGGCTTTTTTTT2370.1703748966607958No Hit
TTGTACGGGGGTGATAGAAGTATTGCTAGAAGCCAGTCTTGAATTTTCTTGG1630.11717767154307897No Hit
AGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGA1620.11645879012256927No Hit
TATGTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1610.1157399087020596No Hit
CTACCAGGGCTCTTAAGATGCGAGTCTGCTGACGCTCCCAGCTGGATAAAAA1610.1157399087020596No Hit
TGTAAGGGGGAGAAGCAGACGGTGATGTGGTTAATGAAAAGAAGAGAACTCC1570.11286438302002084No Hit
GCAGTTGGGAGGCCGGGGCCGGCGGCGGAACAGCTTGGGACCCGAAACGCCT1530.10998885733798211No Hit
CATTGTGGGTGGAAATCTTTTGTATGGACCCAAAAATGAGTGACTAATTACA1500.10783221307645303No Hit
AGCTTAGGGGTCTTTCCCATATAAAAGCCAACCCAGAAAATTGGAAGAAATG1480.10639445023543366No Hit
TGACATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1440.10351892455339493No Hit
GTAGCCATAAAGTGTTCTTTTCTCTGCACCATTTCCAAGAGCTCATTTTCTT1440.10351892455339493No Hit
GAACATGGGCAGTTGGTATGGAAAAACATCTTTTCTTTCAGCCATTGTTACT1420.10208116171237555No Hit
TTCGGTGGGAAGAATAAAGAGTCTCTGTTTTAGAAGGTGAATTATTTAAAAT1420.10208116171237555No Hit
GCTACGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1410.10136228029186585No Hit
TCTTGTGGGAGAATAAAGAAACCTAATTAAATAATAAAAGCCTAGAAAAGGA1410.10136228029186585No Hit
CGTTATGGGGGGTCCTGTGGGGCCCCCACAATGGTCCCAAACAGCTGCCTCT1400.10064339887135618No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)