FastQCFastQC Report
Sat 31 Dec 2022
SRR5845708.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845708.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180625
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT19511.0801384083044983No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC18821.0419377162629757No Hit
TGCAATGGGCAAGGTAAAAATGGACACTGGTGGGAGGTTAGGAAATTCCAGG2680.14837370242214534No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC2170.12013840830449828No Hit
AAACGGGGGATTCCAAAAAAACTGAAGTGGAGGTAATTCTCCCTAACTCATT2060.11404844290657438No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)