FastQCFastQC Report
Sat 31 Dec 2022
SRR5845707.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845707.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180620
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT19701.090687631491529No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC18921.0475030450669913No Hit
TGCAATGGGCAAGGTAAAAATGGACACTGGTGGGAGGTTAGGAAATTCCAGG2840.1572361864688296No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC2160.11958808548333517No Hit
ACGACAGGGGAGAAAACTAATGGAAACATTCACTTGGGGTAAGACAAATGGT2040.11294430295648322No Hit
TCATAAGGGGTGAATCAACAATTTGTTTTTTAAAACTGATGAACAATATTAT2030.1123906544125789No Hit
AAACGGGGGATTCCAAAAAAACTGAAGTGGAGGTAATTCTCCCTAACTCATT1930.1068541689735356No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)