FastQCFastQC Report
Sat 31 Dec 2022
SRR5845706.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845706.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175628
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT19571.1142870157378093No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC18161.0340036896166898No Hit
TGCAATGGGCAAGGTAAAAATGGACACTGGTGGGAGGTTAGGAAATTCCAGG2680.15259525815929123No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC1920.1093219759947161No Hit
AAACGGGGGATTCCAAAAAAACTGAAGTGGAGGTAATTCTCCCTAACTCATT1790.1019199672034072No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)