FastQCFastQC Report
Sat 31 Dec 2022
SRR5845702.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845702.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179283
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT14790.8249527283679993No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC11590.6464639703708662No Hit
TGCGTTGGGCAGGTCAATTTTTACAGGCACCCCACAGACCCTATAAATATGT3000.1673332106223122No Hit
CTAAAAGGGCGATCTTGTCGTGGGGAATTAGAGTGGGGATAATTACATTTTT2110.11769102480435958No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC1960.10932436427324398No Hit
CATCTGGGGAGTCTGAGCAGGTCTGGAAACATGGCCTACTGAAGTGTAGTTG1910.10653547742953877No Hit
ATTCATGGGGTGAATTTCAAAGGATCAAAATCGTACACAATGTATTCTTTGG1850.10318881321709254No Hit
TAAATGGGGAGGAGCACCCGGACCGCTTCATCGAGTGCTACATTGCTGAGCA1850.10318881321709254No Hit
TGTCCGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1840.1026310358483515No Hit
TTACATGGGGAATAACTGTCACTTGGGCTCAGCAAGTACACAAAAGTATGGG1800.10039992637338732No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)