FastQCFastQC Report
Sat 31 Dec 2022
SRR5845701.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845701.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179307
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT15020.837669471911303No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC11050.6162614956471304No Hit
TGCGTTGGGCAGGTCAATTTTTACAGGCACCCCACAGACCCTATAAATATGT2990.16675311058687056No Hit
CTAAAAGGGCGATCTTGTCGTGGGGAATTAGAGTGGGGATAATTACATTTTT2340.1305024343723335No Hit
TTACATGGGGAATAACTGTCACTTGGGCTCAGCAAGTACACAAAAGTATGGG2040.11377135304254714No Hit
GTAACAGGGCAATTAAAGAAATTTTGTAAGTAAGGAATTGACTGTCACATAA2040.11377135304254714No Hit
ATTCATGGGGTGAATTTCAAAGGATCAAAATCGTACACAATGTATTCTTTGG1910.10652121779963972No Hit
TGTCCGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1860.10373270424467533No Hit
CACGTCGGGCATGAGGGATGTTGGATTTTATCCGTATTCAATAAATGGTGTT1840.10261729882268958No Hit
GATTGCGGGAGGCCTTTGTCGCAGCAAACCTTCCCAGCAGCCCTTGAGCCAA1830.10205959611169671No Hit
CATCTGGGGAGTCTGAGCAGGTCTGGAAACATGGCCTACTGAAGTGTAGTTG1810.10094419068971096No Hit
CGTTCAGGGTAGTTTGGTCTGCTGCAGTGCTTGCTGCCAAAGCTTTGAAGGG1800.10038648797871808No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC1800.10038648797871808No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)