FastQCFastQC Report
Sat 31 Dec 2022
SRR5845692.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845692.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130045
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT13441.0334884078588182No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC11940.9181437194817179No Hit
CAAAAAGAGGCTTATGCAACACACATGTGAGCAGGGCACGGTGGGAGACTGC2180.16763428044138567No Hit
ACCTAAGGGTGGTTTTGTGATTGATTTAACTTGTTTGGATATGCTGTAGGGG1920.1476412011226883No Hit
GGCACTGGAAGAATGGACAGCATAAAAACTGGACAGCACTACAAACATGAAA1870.14379637817678498No Hit
TATGCTGGGATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGA1810.13918259064170097No Hit
ATTAGGGACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGT1810.13918259064170097No Hit
GCACTGGGGGTCCTGACCAAACCGTCTTTGAAAGGAATACACATGTGGAGGG1770.13610673228497827No Hit
CTAGTTGCGGGGCGGCCACTGAGCCGGAGCCGGCCTGAGCAGCGCTCTCGGT1740.13379983851743626No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC1740.13379983851743626No Hit
CATGGGAGAAATCCCAGCTTTAAAGTAGGAAATGTAATAAGGACTTCATTTG1740.13379983851743626No Hit
AGATAGGGGTTAGCAGTTGGTTGAATCTGTGGATGCAGAATCCATGGGTACT1700.1307239801607136No Hit
ACCAGGGGCAGTGAAAGTACAAGATAAGCCTTGTACTTGTCAAGGCTTATTT1700.1307239801607136No Hit
GCTATAGGGGCCAGCCAGTCCGCCCGTCCGGAGCCCGGCTCGCTGGGGCAGC1700.1307239801607136No Hit
GCAGTGGGGCTGCAGAGAACATAAAATGTGGGTGAATTTTTGGGAAGCCATG1660.12764812180399093No Hit
GAACCAGGGGCCAGTGAAAAGAAGGACGATGATGTGATTTTAAAAATAGAAG1600.12303433426890692No Hit
TTAGCAGGGTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCT1590.12226536967972625No Hit
GCTCTCGGGGCGGCGTCGCCAGGAGGAGCGCGCGGGCACAGGGTGCCGCTGA1580.12149640509054559No Hit
TTGCATGGGACACACAAAGACTAGAATGCAGAAATTAAAGAAGAAAAAAGAA1580.12149640509054559No Hit
TGGTTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1520.11688261755546157No Hit
GTTACTGGGTCTGCTAGCGGGATTATACTTCAGAATTACCACTGCAAGTTTA1500.11534468837710024No Hit
CACTTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1500.11534468837710024No Hit
GACATTGGGATGAGATTATGGGCTGGCTCCATTTCTTGGACTTAAAATGCAT1490.11457572378791955No Hit
TACGCCCGGGAGTTTTGGAGGCGCTTCTTTGCTGAAGTATGATTATATTCAG1480.1138067591987389No Hit
ACGCGAGGGGACAACAGAGCATACGAGATGACCAAGGTAGCCCATCGAGTCT1480.1138067591987389No Hit
ACTTCCGGAGGGAATCTTGGTCAGAGAATTTGTCTGCAATGACTTACGTCCA1470.11303779460955822No Hit
CACCGAGGGTGCTGGCGGGACTGAATTTTCTCAAGGCTTACAGGCCCTTCCA1470.11303779460955822No Hit
AAACGAGGGAGAAACCTTGCCCCTGATTTTGGGGCTCATCTTGGGCCTCGTC1460.11226883002037756No Hit
TCTAGTGGGTGGGAGATTGTCCATATCCCTCCGTAATTAAGGGCCAGCAAGT1460.11226883002037756No Hit
CATGCGGGGAGTCCTCAGCGGGGCGCGTGGCGAGCGGACTCGACTCGGCACC1460.11226883002037756No Hit
GTCTTCGGGTTGATGACCTCGATATGGATTTAGATTATCAAATGTGTTTGGT1460.11226883002037756No Hit
CACACGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1440.11073090084201623No Hit
ACAGGTGGGTTATAATAGTATTTCTGGAATTTAAATCATTAGTATATTAAAT1420.10919297166365488No Hit
GCTCGGGGAGGGTGAACCATGAACACTTATTAGCTATTTGTCAACTTAGATT1420.10919297166365488No Hit
CAGTGAGGGGAATACTATGCAGCCATAAAGGAATGAGATTATGTCTTTTGCA1420.10919297166365488No Hit
TAGTGAGGGGAGGGGCGGTTGGCTTTGTTGGGTGAGCTTGTTTGTGTCCCTG1410.10842400707447424No Hit
ATCAAAGGGTGAGGCATCAGTTGCTGTATTTATTTTGCAGAATCAATGAATT1410.10842400707447424No Hit
TCATTGGGCGCAAAGGGAAACTTATCTTCTTTTATGAATGGAGCGTCAAACT1410.10842400707447424No Hit
TTCTAAGGGCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC1400.10765504248529355No Hit
ACACCTGGGGAAATCAGATTGCCAACTTCTTGACTTTCAATGTTAGACATTT1400.10765504248529355No Hit
CCAACAGGGGAGGAGGCTGTCACAGGATTTATACAGCCCACCAGCAAATATA1390.10688607789611289No Hit
GCACCAGGGACTTGAAATCAGTTTGGCAATATTTATCACAAGTCTTAGAATG1390.10688607789611289No Hit
GACGCTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1390.10688607789611289No Hit
CGTAATGGGGTATACACGTGTTTTTAATCAATACATTCATTTTTATTTGCTT1380.10611711330693221No Hit
GTATCTGGGGGGGGCTGCCTGCTGGAGGTGGAGGAGTTGCTGGTGTCTGAGG1380.10611711330693221No Hit
ATGACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1380.10611711330693221No Hit
GTCTGGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1370.10534814871775156No Hit
TCGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG1370.10534814871775156No Hit
GTTACCGGGATCGGGCCTGGCGATAAAGAACAAAGACTGTGCCTAAAAGTGG1360.10457918412857088No Hit
GAATGGGGCTGCCTCAGTTTTCTCACAACCTACTTTCTCCTCAAATACACAA1360.10457918412857088No Hit
TTCACTGGGGCTTGAAAAATACAAAGTCAATGTACACAAGTCAATTGCTTTT1350.10381021953939022No Hit
AACAGCCAGAAAGATTAAGATGCAAATGCAAAAGGAACCATACAGATTTCAA1340.10304125495020953No Hit
TAAGCAGGGGCAGATTTCTCTAGCTTAATTCTTATCACTTTCCTAGATGAAC1340.10304125495020953No Hit
CGGCATGGTGAAGCCCTGTCTCTACTGGAAAAAACAAAAATTAACTGGGTAT1340.10304125495020953No Hit
TTAGTGAGGGGTCAACAGTAAGCGCATGCTTTGCTATGATCCTAGCCACAAT1330.10227229036102888No Hit
TCTGTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1330.10227229036102888No Hit
TTGGTGGGGAAAACTAGGAAGGCAAAAGAAATTTCTGAAGCTTCTGAAAACA1330.10227229036102888No Hit
CTCGCTGGGAGTCCATTAAAAGTTTGTCACCTTACATATAAATAAATTATTC1320.1015033257718482No Hit
CGTAAAGGGGGAGCTTGTCTCATACTGGACCAATGATAGTATCTTTGCCTCT1320.1015033257718482No Hit
TCTAAAGGGATTTTCGGTCATATAAAAACTAACGAATTTTGCATTCCACAGA1320.1015033257718482No Hit
TACTTGGGGATCTGTGGATGAATGGAAATCACACTGAATTTTAATTCTTATT1320.1015033257718482No Hit
ATGTCCGGGTGAAATTTGGAATTTAGTATTTATGAATGAATATGTTCCAGAT1310.10073436118266754No Hit
CATGACGGGAGCCCGGGTGACCGAATGAGGCTCTGTCTCAAATAAATGAAAA1310.10073436118266754No Hit
ATTTGAGGGGTGGCTGAAACTCTTAAATGTAAATTAATGCTGGACTTAACAG1310.10073436118266754No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)