FastQCFastQC Report
Sat 31 Dec 2022
SRR5845691.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845691.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126703
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT13611.0741655682975146No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC12050.9510429903001507No Hit
CAAAAAGAGGCTTATGCAACACACATGTGAGCAGGGCACGGTGGGAGACTGC2690.21230752231596725No Hit
GCTCTCGGGGCGGCGTCGCCAGGAGGAGCGCGCGGGCACAGGGTGCCGCTGA1740.13732902930475205No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC1710.13496128742018737No Hit
TATGCTGGGATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGA1660.1310150509459129No Hit
GGCACTGGAAGAATGGACAGCATAAAAACTGGACAGCACTACAAACATGAAA1640.12943655635620308No Hit
GCACTGGGGGTCCTGACCAAACCGTCTTTGAAAGGAATACACATGTGGAGGG1590.1254903198819286No Hit
GACATTGGGATGAGATTATGGGCTGGCTCCATTTCTTGGACTTAAAATGCAT1560.12312257799736391No Hit
TTTCCAGGGACAATCACCCATATGAAAAAATTGTTTTCACCTGATGAAAATG1540.12154408340765413No Hit
ATTAGGGACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGT1510.11917634152308944No Hit
GTTACTGGGTCTGCTAGCGGGATTATACTTCAGAATTACCACTGCAAGTTTA1490.11759784693337963No Hit
GCAGTGGGGCTGCAGAGAACATAAAATGTGGGTGAATTTTTGGGAAGCCATG1480.11680859963852475No Hit
AGATAGGGGTTAGCAGTTGGTTGAATCTGTGGATGCAGAATCCATGGGTACT1470.11601935234366983No Hit
TAGTGAGGGGAGGGGCGGTTGGCTTTGTTGGGTGAGCTTGTTTGTGTCCCTG1470.11601935234366983No Hit
CATGGGAGAAATCCCAGCTTTAAAGTAGGAAATGTAATAAGGACTTCATTTG1470.11601935234366983No Hit
GCTATAGGGGCCAGCCAGTCCGCCCGTCCGGAGCCCGGCTCGCTGGGGCAGC1470.11601935234366983No Hit
GAACCAGGGGCCAGTGAAAAGAAGGACGATGATGTGATTTTAAAAATAGAAG1460.11523010504881494No Hit
ACCTAAGGGTGGTTTTGTGATTGATTTAACTTGTTTGGATATGCTGTAGGGG1460.11523010504881494No Hit
TACGCCCGGGAGTTTTGGAGGCGCTTCTTTGCTGAAGTATGATTATATTCAG1440.11365161045910514No Hit
TCGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG1440.11365161045910514No Hit
ATGTCCGGGTGAAATTTGGAATTTAGTATTTATGAATGAATATGTTCCAGAT1420.11207311586939536No Hit
ACACCTGGGGAAATCAGATTGCCAACTTCTTGACTTTCAATGTTAGACATTT1420.11207311586939536No Hit
ATGCCTGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1410.11128386857454045No Hit
TTAGCAGGGTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCT1400.11049462127968555No Hit
CACTTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1390.10970537398483067No Hit
ACCAGGGGCAGTGAAAGTACAAGATAAGCCTTGTACTTGTCAAGGCTTATTT1390.10970537398483067No Hit
ATGACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1390.10970537398483067No Hit
GTCTTCGGGTTGATGACCTCGATATGGATTTAGATTATCAAATGTGTTTGGT1380.10891612668997577No Hit
GAACATGGGGTTAGAAAATATAATCATAAACTGAAACTAAGATTTAGAAATT1370.10812687939512086No Hit
TCTAGTGGGTGGGAGATTGTCCATATCCCTCCGTAATTAAGGGCCAGCAAGT1350.10654838480541108No Hit
TTGTCCGGGACTGATCGCATTGAAAACATTGATCACCTGGGTTTCTTTATTT1350.10654838480541108No Hit
TCATTGGGCGCAAAGGGAAACTTATCTTCTTTTATGAATGGAGCGTCAAACT1350.10654838480541108No Hit
TGGTTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1340.1057591375105562No Hit
ACGAAAGGGCTGCTTGGCATTTGGCCATTGATATTCAACAGGTCACTGACCA1340.1057591375105562No Hit
ACGCGAGGGGACAACAGAGCATACGAGATGACCAAGGTAGCCCATCGAGTCT1340.1057591375105562No Hit
CTCGCTGGGAGTCCATTAAAAGTTTGTCACCTTACATATAAATAAATTATTC1330.10496989021570129No Hit
CACCGAGGGTGCTGGCGGGACTGAATTTTCTCAAGGCTTACAGGCCCTTCCA1330.10496989021570129No Hit
TAGAATCGGGATGAATGGAGATCAACTATACTTGGTCCACCGGGTTCTGTAT1320.10418064292084639No Hit
CAGTGAGGGGAATACTATGCAGCCATAAAGGAATGAGATTATGTCTTTTGCA1320.10418064292084639No Hit
GACGCTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1320.10418064292084639No Hit
ACTTCCGGAGGGAATCTTGGTCAGAGAATTTGTCTGCAATGACTTACGTCCA1310.1033913956259915No Hit
TGCTAGGGTCATAGTGGGGCCTGAGGCAAGAGGAAAAATCAGCAATACTGAT1310.1033913956259915No Hit
TTATAGGGGATAAAAGGGATTGTGCTTAGCCATCTCTCTAAATCAAAGGGAA1300.1026021483311366No Hit
TAAGCAGGGGCAGATTTCTCTAGCTTAATTCTTATCACTTTCCTAGATGAAC1300.1026021483311366No Hit
AATAAAGGGTAAAAGAAGTGAGGCAAAAAGGTCAGAGAATGTAGACAGTGCT1300.1026021483311366No Hit
GCACCAGGGACTTGAAATCAGTTTGGCAATATTTATCACAAGTCTTAGAATG1300.1026021483311366No Hit
TGCCGGGGGACCAGGTTGCACTTGGAAGAGATCCTCGCGTCTTCATGAGGCA1300.1026021483311366No Hit
CTATCAGGGCGCCTGGGGGGCCTTTGCCAACGTGGGGTCTCTTCTAACTTCA1300.1026021483311366No Hit
GTACGGGGATCTGTGAGTGGGATATCTGAAGAGAAAAATGTTTTACTGATAA1290.1018129010362817No Hit
GCTCGGGGAGGGTGAACCATGAACACTTATTAGCTATTTGTCAACTTAGATT1280.10102365374142681No Hit
CATGCGGGGAGTCCTCAGCGGGGCGCGTGGCGAGCGGACTCGACTCGGCACC1280.10102365374142681No Hit
TCACCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1280.10102365374142681No Hit
ATATGAGGGAACCAAAGGGGTGACCAGCCCTCAGATGTGCTTATTGGATTCC1280.10102365374142681No Hit
GTTGGTGGGATATTATAAATTACTTTAACGGTACACTTGTTTTTCATTGCTT1280.10102365374142681No Hit
ACAGCTCCCGGGACCCCGAAGTGCTGCGGGAGCATATGACCCAGCTCAAGGA1270.1002344064465719No Hit
ATGATTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1270.1002344064465719No Hit
GAATGGGGCTGCCTCAGTTTTCTCACAACCTACTTTCTCCTCAAATACACAA1270.1002344064465719No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)