FastQCFastQC Report
Sat 31 Dec 2022
SRR5845684.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845684.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179073
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC5080.2836831906540908No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT4830.2697224037124525No Hit
CTTCATGGGGTTGGCTATTCTGGTTCTTTTGCTTCTCCGTGTAAACTTTAGA2120.11838747326509301No Hit
GCATCAGGGAAGAAGACATCTGTCTTCCCAAATCTAAAGTAGGCAAAAAATA2010.11224472701077215No Hit
GGTGCCGGGGGCACTGGGTTTTACAGTATCAATGAGGCTATGATTCTAGAAT1970.11001100110011No Hit
AGCATTGGGAGCCCCACACGGACCAGTGTGCAGAAGGCTCCGGGAACCGCAG1830.10219296041279254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)