FastQCFastQC Report
Sat 31 Dec 2022
SRR5845683.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845683.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177270
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC4590.2589270604163141No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT4570.25779883793083996No Hit
CTTCATGGGGTTGGCTATTCTGGTTCTTTTGCTTCTCCGTGTAAACTTTAGA2170.1224121396739437No Hit
TGATCAGGGACACATACAAAAGTTATAAATGGATGATAAACAACATCGGCAA2070.11677102724657303No Hit
GCATCAGGGAAGAAGACATCTGTCTTCCCAAATCTAAAGTAGGCAAAAAATA1990.11225813730467649No Hit
AGTTCTGGGAGAACTTTTCATCATGGGATAGTTTTTTCAAGGAACACATCAT1890.10661702487730582No Hit
GTATCAGGGGAGAGGAAGATGGCATAACCAACTTGGAGATGCTCCAGAACAC1830.10323235742088341No Hit
GAGTCGGGAGCTGAGGTTGGCATTCGAGGAACAGCTGGAAGATCTGATGGGC1800.1015400236926722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)