FastQCFastQC Report
Sat 31 Dec 2022
SRR5845657.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845657.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224246
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC7990.3563051291884805No Hit
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT5450.2430366650910161No Hit
AACCATGGGCCAGGCTTTTGGACCTCGGCTCATCCAGCTTGATGATGTCACC2330.10390374856184725No Hit
GGTTCAGGGTGAAATAGTATTTTTTTCTTATATTTTGTTTCCTGTTCGTTGT2310.1030118708917885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)