FastQCFastQC Report
Sat 31 Dec 2022
SRR5845637.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845637.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216519
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT9010.41612976228414134No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC7700.3556269888554815No Hit
GACTCTGGGGCAGTTTGCTTCTTTTATTAGTAATGTGGATTGATGTTTTCTC2850.13162817119975614No Hit
TTCAGCAGGGGACCTTTTGCCTCGAGGCTGAGCTGGAAAATCTTGAAAATAT2440.11269218867628246No Hit
TAAGTAGGGGACATGAGAATTGAGAAAAGAAATCAATATTTAGAAGGGTTAC2430.1122303354440026No Hit
GCACAGGGGTTACTAAAAGGAAGACAGGAAGGAAGGAAAGAAGGAAAAGAAG2390.11038292251488323No Hit
GCATCAGGGGCAAGTCCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGAA2360.10899736281804369No Hit
TTCCGTGGGTGAATGCATTCTTTTTTGCTGTTATGGGATATTATGAATTCAC2340.108073656353484No Hit
AATAATGGGGTAGGCAGTGGCCCCTATTGAGAAGTTTTCCGGTAGAGTTGGA2190.1011458578692863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)