FastQCFastQC Report
Sat 31 Dec 2022
SRR5845633.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845633.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155248
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT7790.5017778006802021No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC5980.38519014737709983No Hit
TTGGCTGGGCTCCCCACCAGTGTTCTTAAAAACATAAGTCTCTTAAGTAGTT1960.12624961352159125No Hit
CCAGGCCCAGAGAACTCTTCCACAAACAAGATGAGAGCCACTCGGGAAAAGA1880.1210965680717304No Hit
AGCCATGGGAGAAATAAACTTTACTGAACAATCTGAGAGGCTGATTTTTATT1860.11980830670926518No Hit
ACCAAAGGGTAGAGCTACTTTGCTGAAAGACTGCTGTATCTTTTTAAAAACT1710.11014634649077605No Hit
GATATGGGGGTCCTGAAGACCTTGCCACATTCGTTGCACTTGTAGGGTTTCT1610.10370503967844996No Hit
CGTAGGGGGACAGAGGAGTGAAGTGATTTGATTTATGTTTTAAAAGGATTAC1590.10241677831598474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)