FastQCFastQC Report
Sat 31 Dec 2022
SRR5845632.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845632.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155102
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT7210.46485538548825933No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC6050.39006589212260323No Hit
CCAGGCCCAGAGAACTCTTCCACAAACAAGATGAGAGCCACTCGGGAAAAGA1910.12314476924862348No Hit
TTGGCTGGGCTCCCCACCAGTGTTCTTAAAAACATAAGTCTCTTAAGTAGTT1740.11218424004848422No Hit
GATAGCGGGACAAACACATGTGCATATCACACACATGCACACACACAAACAC1690.10896055498961973No Hit
TAGTGCGGGACACCAAAAGCGAGCAGGAGTAGCTATTTTATCAGACAAAACA1690.10896055498961973No Hit
ACAGATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1680.10831581797784684No Hit
AGTGCCGGGAGGAGGCAGAAGGAAATCCTCAACCTTCCGAAGAAGGCGTAAG1620.10444739590720944No Hit
CAGTAAGGGAAATCAGAAAAATGGGAACTTTTTCTGCCTGGTTCCAAATCAG1610.10380265889543656No Hit
GATATGGGGGTCCTGAAGACCTTGCCACATTCGTTGCACTTGTAGGGTTTCT1600.10315792188366364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)