FastQCFastQC Report
Sat 31 Dec 2022
SRR5845631.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845631.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155175
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGCCGTCT7430.47881424198485584No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTGATTACCATCTCGTATGC5760.37119381343644275No Hit
TTGGCTGGGCTCCCCACCAGTGTTCTTAAAAACATAAGTCTCTTAAGTAGTT1750.1127758981794748No Hit
ACCAAAGGGTAGAGCTACTTTGCTGAAAGACTGCTGTATCTTTTTAAAAACT1740.11213146447559208No Hit
CGTAGGGGGACAGAGGAGTGAAGTGATTTGATTTATGTTTTAAAAGGATTAC1640.10568712743676495No Hit
ATTGAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1620.10439826002899952No Hit
CCAGGCCCAGAGAACTCTTCCACAAACAAGATGAGAGCCACTCGGGAAAAGA1620.10439826002899952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)