FastQCFastQC Report
Sat 31 Dec 2022
SRR5845560.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845560.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences285887
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCATGCACATCTCGTATGC8480.29662069279120773No Hit
CTTATACACATCTCCGAGCCCACGAGACTCATGCACATCTCGTATGCCGTCT7950.2780818994917572No Hit
ACGTTGGGGGAGACGCGCCGGAACCGGGACGCGATAAATATGCAGAGCGGAG3310.11578001098336056No Hit
TCTGAGGGCCGATCTTTATCCGGGCTGTTGAAAAGGCATAGAAAGTTCTGGG3050.10668550861004523No Hit
GCTTTTGGGGTGGAGACGGAGGCCAACGGGGGCCTGGTGGAGAAGGAGGTGC3040.10633572005722541No Hit
ATCAACGGGCACCAAAGAATTGTAGGCAGTGGCCCCTATTGAGAAGTTTTCC2950.10318762308184702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)