FastQCFastQC Report
Sat 31 Dec 2022
SRR5845537.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845537.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187265
Sequences flagged as poor quality0
Sequence length52
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT5480.2926334339038261No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC5280.28195338157156974No Hit
TGAGAGGGCGATCTACATCAGGGCACTGATGCCGCTCCGTTTTCCCAGTTAT2800.14952073265159No Hit
CATACAGGGGATGCAGACTTGTTTATCAGTCACTCAAGTAAATATGAATACT2260.12068459135449765No Hit
TGGATGGGGATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCT2000.10680052332256428No Hit
GGCCATGGGTCTTCTAGTTTTGACAGAGAATTAGAAAGAGAGAAAGAACGCC1920.1025285023896617No Hit
GCAGTGCGGGCGATCTGATAGCGGGGCCCGCGGGGCATTGTGGGCCGTCCGC1900.10146049715643607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)