FastQCFastQC Report
Sat 31 Dec 2022
SRR5845535.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845535.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181777
Sequences flagged as poor quality0
Sequence length52
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT5340.2937665381208844No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC5040.27726280002420545No Hit
TGAGAGGGCGATCTACATCAGGGCACTGATGCCGCTCCGTTTTCCCAGTTAT3190.17548974842801893No Hit
TGGATGGGGATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCT1960.10782442223163546No Hit
CATACAGGGGATGCAGACTTGTTTATCAGTCACTCAAGTAAATATGAATACT1940.10672417302519022No Hit
GCGCATGGGGGAGGAATTTGTCTCACATAGTGTTCTTCCCACTTCTCGTCCC1880.10342342540585443No Hit
GCAGTGCGGGCGATCTGATAGCGGGGCCCGCGGGGCATTGTGGGCCGTCCGC1860.10232317619940916No Hit
AAAAAAGGGTCAGGTTCTTTGAGAGAGAAGTGAAGATGGGCGCAAAGCTGCT1820.10012267778651866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)