FastQCFastQC Report
Sat 31 Dec 2022
SRR5845520.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845520.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences304889
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC6870.2253279062216085No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT5760.1889212139499949No Hit
AAATGAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA4020.1318512639026006No Hit
AAGCCAGGAAAGTTCAGAGAATTACTTCAATAATATGACAGCCTCTTCCATT3440.11282794722013585No Hit
GGCAATGGGGTAAAGGAAAATTAATTGCATTGCAAGGTGTTAAATAAATAAA3270.1072521475028617No Hit
AACGATGGGACTCATTTAGAGGGATCGCTCAGGCCGCAGCAGGAATGAATGG3260.10692415928419852No Hit
AGCGGCGGGGATGCAGTCAACAATGAGGTACTACTGAGTATGGAAGTTATAG3200.10495622997221939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)