FastQCFastQC Report
Sat 31 Dec 2022
SRR5845504.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845504.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201844
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC5210.25812013237946135No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT4890.24226630467093396No Hit
CCATATGGGAGAGAATAAAAAGATCAAAGCCAAAGATAGGGATAAAATATTT2370.11741741146628087No Hit
GATCATAGGGAAGCAGACTCAGACTGTCTCAGGATCAAAGCAACCCTCAATG2320.1149402508868235No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG2280.11295852242325756No Hit
AGTGTTGGGGTATGTGCATTTGGTATCATGGGCCGTGGAACAGAATATATGT2250.11147222607558313No Hit
TACCGTGGGATATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGTT2120.10503160856899388No Hit
CATAATCCCCAGTGCAGCCAGGGTTTGTGTGTCATCGTACTGGAGTAGAGGG2100.10404074433721092No Hit
CACGCAGGGGTGTTAAACAACAACAAACTACAACAAGCAGCAACAACAAACT2040.10106815164186203No Hit
TGAAATGGGAGAAGGAAAGTAGTTAGAGAGTCACACAGCTAAGTTTGCCCTG2030.10057271952597054No Hit
GCTTTGGGGGGCTTCAGTAGAATCATCAGATCTAAAACTGCTGATAGCAACT2030.10057271952597054No Hit
AGCTCGGGTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAG2030.10057271952597054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)