FastQCFastQC Report
Sat 31 Dec 2022
SRR5845502.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845502.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201677
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT4770.2365168065768531No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC4740.23502927949146404No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG2440.1209855362783064No Hit
ATGTCCGGGCCAGATAACAGCTGATCCAACTTTCCTTTGTGTGGCTTTGTCC2270.11255621612776866No Hit
GATCATAGGGAAGCAGACTCAGACTGTCTCAGGATCAAAGCAACCCTCAATG2240.11106868904237964No Hit
TGAAATGGGAGAAGGAAAGTAGTTAGAGAGTCACACAGCTAAGTTTGCCCTG2230.11057284668058331No Hit
GCATCAGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGAT2170.10759779250980528No Hit
CACGCAGGGGTGTTAAACAACAACAAACTACAACAAGCAGCAACAACAAACT2140.10611026542441628No Hit
CCATATGGGAGAGAATAAAAAGATCAAAGCCAAAGATAGGGATAAAATATTT2140.10611026542441628No Hit
AGTGTTGGGGTATGTGCATTTGGTATCATGGGCCGTGGAACAGAATATATGT2080.10313521125363825No Hit
GAGCTGGGGGGGAAAATTGGAAGAACGAGAGGGGGAGAGATGTAAGAAAAGA2050.10164768416824922No Hit
GCAAACGGGTCTGTCTAGAGATGGTGTCAAGATCTGTGTTGGTTGGCCTCCA2020.10016015708286022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)