FastQCFastQC Report
Sat 31 Dec 2022
SRR5845491.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845491.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206292
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC9600.46535978128090283No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT9400.45566478583755066No Hit
CACGCAGGGGAAAGAGGAATAGTGTATGTTTCTATGAACTCAGACTTTAGTT2090.10131270238302988No Hit
GAGAGAGGGCAAACAAAAATGGAAAAACAACATACAAAAACCTATGGGATAT2080.10082795261086228No Hit
TTTACCGGGATAATTAGGATTACCAATAACATTTTATTATTAGAAACATTTA2070.10034320283869468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)