FastQCFastQC Report
Sat 31 Dec 2022
SRR5845411.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845411.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163233
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTACCAGTAATCTCGTATGCCGTCT5810.355932930228569Illumina PCR Primer Index 5 (95% over 21bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACCAGTAATCTCGTATGC5790.3547076877837202No Hit
TCAGCGGGAATGGCGCAACACTTTGTAATACAAATGAAAGTTTTCAAAACTG1920.11762327470548235No Hit
CTTATACACATCTCCGAGCCCACGAGACTACCAGTAACTGTCTCTTATACAC1790.10965919881396531No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTACCAGTAACTGTCTCTTA1680.10292036536729705No Hit
TTCCTGAGGGTTTAATAAATCATTAAATTATTTCATTAAAAAAGAAAAACAG1650.1010825017000239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)