FastQCFastQC Report
Sat 31 Dec 2022
SRR5845120.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845120.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences226736
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGCCGTCT9410.4150201114953073No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGC9190.405317197092654No Hit
GAACAGGGGAGACAATTAGAGTTTTCTAATTACACTTCCAGAATAAATCTTA3120.13760496789217416No Hit
GATTCGGGGACACCATTTTGTTCTACAGTCATTTACCTTAGCACTCCTATTG2730.12040434690565238No Hit
TGCAAAGGGATGTACAGAAGTTGATACCAATTCATATCCATGTATTCACAGC2600.11467080657681179No Hit
TAAAACGGGGGAAAGAGCTTGAGTTAGATTGAAGTAGAATCAGTGATAGAAA2590.11422976501305483No Hit
TCACTGGGGAATTTGGTTGGCCAATTAGAAATGCCTTTTTCAGTTGGTGTAT2520.11114247406675605No Hit
GAAAGGGGTGTAATACCGCATGTTAAACTCACAGAAGGTTTTTCTTGGAGAA2510.11070143250299909No Hit
TCAGCTGGGCAAAGAACAGCAGAGCTTGCACCCTGACTCAGCAGGCCTGAGA2430.10717309999294335No Hit
AATTGTGGGCTTGAATGAAGGGAAGTATAGCTGCCACAGCCCACGTATCTAT2420.10673205842918637No Hit
TTGTTTGGGCAAACACTGGATGCAGAAATTTTGGATTTTTCATCACTTTCTC2400.10584997530167244No Hit
AAAGCTGGGAAGCACTGGATGTTTAGAAGTTTCTAGTCAGTCCTAAAGTGAG2350.10364476748288759No Hit
CGTTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA2340.10320372591913061No Hit
TCCGCAGGGAAAAAAAGGGAATATCTGGTGTATGTACATGATGGAATACTAT2330.10276268435537364No Hit
GCTGTTGGGTATCTCCACATCTCAAGATCCTGAGCTTAATCACACTTGCAAA2320.1023216427916167No Hit
GCGTGGGGAAAAGCTGGTGTTTTTACAACTAGCATTGAATGCAGTCCAATTT2320.1023216427916167No Hit
AAAATTGGGCGGTGGCATTTGCTGAATAACAACAATTTAGGAATGCTCAATG2310.10188060122785972No Hit
AACCCGGGGCATATGATGTTGTGCACTTTCTCCTCCATTTTTCATTTGGAAT2300.10143955966410273No Hit
CAGTGGTGGGTTCATCTGTGTTTGTTGTATTTAAAAAAATAAATGAAAACAT2290.10099851810034578No Hit
AGCAGTGGGATTTCAGGGCAGGAGGAATGGATGGCAGTCTCGTCAATACCCC2290.10099851810034578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)