FastQCFastQC Report
Sat 31 Dec 2022
SRR5845119.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845119.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences225345
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGCCGTCT8700.38607468548226054No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGC8270.3669928332112982No Hit
TAAAACGGGGGAAAGAGCTTGAGTTAGATTGAAGTAGAATCAGTGATAGAAA2770.12292262974550135No Hit
GAAAGGGGTGTAATACCGCATGTTAAACTCACAGAAGGTTTTTCTTGGAGAA2750.12203510173289846No Hit
GAACAGGGGAGACAATTAGAGTTTTCTAATTACACTTCCAGAATAAATCTTA2700.1198162817013912No Hit
GATTCGGGGACACCATTTTGTTCTACAGTCATTTACCTTAGCACTCCTATTG2690.11937251769508976No Hit
TGCAAAGGGATGTACAGAAGTTGATACCAATTCATATCCATGTATTCACAGC2600.1153786416383767No Hit
AGAGTTGGGAAACAGAATGATCTGGGTTTCCAAGGCAGTATATGTAAAAAGC2540.112716057600568No Hit
CAATTTGGGATGAAAAGAGAATGAGAAGCTGGGAAGAAGAGGCCTTGTAGGC2530.11227229359426656No Hit
TAAGACCGGGGCTGAGGTTGAGTAAATACAGGTTTTTTACAACTCCTAAAGA2520.11182852958796512No Hit
TGAACTGGGGCCTGAAAGAAAGCATAAAGAAGTTCTAACTCTGAAACTAACT2510.11138476558166367No Hit
GCAGACAGCTTGATTTTAGCTAAGTGAAACCCATGGTACCAAAGTAGTTCAG2430.10783465353125209No Hit
GCTCATGGGGATCTAATGCTGGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCT2430.10783465353125209No Hit
TTATATGGGAGAACAGTTCAGAATCAGAAGACGAAGATGACAGCATCCCATC2420.10739088952495064No Hit
AAAATTGGGCGGTGGCATTTGCTGAATAACAACAATTTAGGAATGCTCAATG2410.10694712551864917No Hit
CGTTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA2400.10650336151234772No Hit
AATTGTGGGCTTGAATGAAGGGAAGTATAGCTGCCACAGCCCACGTATCTAT2390.10605959750604628No Hit
TCCGCAGGGAAAAAAAGGGAATATCTGGTGTATGTACATGATGGAATACTAT2380.10561583349974484No Hit
TCACTGGGGAATTTGGTTGGCCAATTAGAAATGCCTTTTTCAGTTGGTGTAT2360.10472830548714195No Hit
ATAGTTGGGGGATCTCCAACATGGCAGCCTTTTCCTTAGAACACCAAAGATT2350.10428454148084047No Hit
TTCGGCTGGGACCCAAATAAAACGAACTGATACATATTTCTCCAAAACCTTC2320.10295324946193614No Hit
TCAGCTGGGCAAAGAACAGCAGAGCTTGCACCCTGACTCAGCAGGCCTGAGA2310.1025094854556347No Hit
CAGTGGTGGGTTCATCTGTGTTTGTTGTATTTAAAAAAATAAATGAAAACAT2300.10206572144933325No Hit
GCTGTTGGGTATCTCCACATCTCAAGATCCTGAGCTTAATCACACTTGCAAA2300.10206572144933325No Hit
TTGTACGGGGGTTTTGCTTGTATTTTAGATTCTGATACATACGCTGTTTCAC2280.10117819343673033No Hit
CACATGGGGGGAATACAGTGATGAATAGGCTGGAAGGGAGAATGGAATAGAA2280.10117819343673033No Hit
AAAGCTGGGAAGCACTGGATGTTTAGAAGTTTCTAGTCAGTCCTAAAGTGAG2270.10073442943042889No Hit
TCACTAGGGAGAGCAGCAGGAAGTAAGCTAATGCTTATTCTTTGCTGTCTCC2260.10029066542412744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)