FastQCFastQC Report
Sat 31 Dec 2022
SRR5845088.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845088.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264303
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGCCGTCT21600.8172438451322914No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGC15750.5959069704089625No Hit
GATATAGGGATGGTAGCTAGTAGCCACACTTGAACTGTAAGTAGTAAGACTG4090.15474663549032738No Hit
GCTATAGGGATTGCTTAATGAATTTAGAAAACATGTTTTCCTTAACTGACAT3350.1267484667219063No Hit
TGTAATGGGAGGACTCTTGGGAGGATTGTGAAGCTAATGGCACCTCCTTCCT3040.1150195041297299No Hit
AATGCTGGGACTGGGAATTAATCCACATGTCTTACAGGTGAAGTTCTAACAC3040.1150195041297299No Hit
CCTGTTGGGAAACAGATCGCATATTATGATCTTGCTGCAGCCACAGTGCAGC2870.10858749238563316No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)