FastQCFastQC Report
Sat 31 Dec 2022
SRR5845087.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845087.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences318624
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGCCGTCT18330.5752862307924074No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGC13780.4324846841418098No Hit
CGTAACGGGAGGCCCAGGGTGGCTGCTGCTTCCTGCTAAGTGGGGGAGGTGA3880.12177362659435574No Hit
TCTCGCGGGCGAAATGAAAGGAAATCAGTATATCAAAGGGATACCTGGATTC3730.11706588329818217No Hit
CCTCATGGGTAAGAAGATGCACTTTCTGTAACTTTGTCTAAGGATTTAAATT3730.11706588329818217No Hit
TACTCAGGGATAGAGAGTTATAAAAGAAATAGCCAACTGTGGAAATGTTGAC3370.10576729938736568No Hit
GGCACCGGGTCATAAGTGCTTTCCTGAAATTAGCTAAAATTTGTGCTTATTC3350.1051396002812092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)