FastQCFastQC Report
Sat 31 Dec 2022
SRR5845086.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845086.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences320714
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGCCGTCT19010.5927399489888188No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGC13730.42810728561896266No Hit
CGTAACGGGAGGCCCAGGGTGGCTGCTGCTTCCTGCTAAGTGGGGGAGGTGA3910.12191547609396533No Hit
TACTCAGGGATAGAGAGTTATAAAAGAAATAGCCAACTGTGGAAATGTTGAC3490.10881969605318134No Hit
AATACAGGGAAGAAGACCAAGGCCCACCATGCCCCAGGCTCAGCAGGGAGCT3420.10663706604638401No Hit
GTACCGGGGGGCCATTCATACTTAAGTTGATCACTTGCCCATGGTGGACATT3410.10632526175969868No Hit
GTCCATGGGCATTTGTTATTGGTCTGTTCAAATTTTCTGTTTCTTTATGATT3390.105701653186328No Hit
CGACCAGGTTAGGATCTAAGTTTTAAATAAGAAACCAGATATCTAGAGATTC3340.10414263175290134No Hit
TGTTGCGGGACATAAAGATCACTGAGTAAAGATTCTTAACTTTTTAAAGCTG3310.10320721889284534No Hit
GAGCCGGGGGAAAAATATGAGAAGTTGTTAGAATATTGTTTTTAAAGTACAT3220.10040098031267733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)