FastQCFastQC Report
Sat 31 Dec 2022
SRR5845085.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845085.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences320632
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGCCGTCT17920.5588961800444123No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGCTAGTATCTCGTATGC14020.43726140871778235No Hit
CGTAACGGGAGGCCCAGGGTGGCTGCTGCTTCCTGCTAAGTGGGGGAGGTGA3880.12101100326854462No Hit
AGCAATGGGGTATCTAGAAAACCTTTGCCTAATCCAAGAGTACTAAGATTTT3610.11259013448439333No Hit
TCCGTAGGGCTTCCGATCTTACGCTGGGCATGCATTTGAGTTACTGTCTAGT3400.10604056987449786No Hit
CCTCATGGGTAAGAAGATGCACTTTCTGTAACTTTGTCTAAGGATTTAAATT3300.10292172958407146No Hit
TCTCTTGGGGGAATGTCTTTTCCTGAAGGTGCACAGAGACTTCCAAGTCTCC3270.10198607749694355No Hit
TCTCGCGGGCGAAATGAAAGGAAATCAGTATATCAAAGGGATACCTGGATTC3240.10105042540981561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)