FastQCFastQC Report
Sat 31 Dec 2022
SRR5845040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84244
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGTCGCATATCTCGTATGC7500.8902711172309008No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTCGCATATCTCGTATGCCGTCT6440.7644461326622667No Hit
TTGCAAGGGATCGTGGAAAATGTCAACCAGGAAAATGATGAAAAAGATGAAA2050.24334077204311286No Hit
TGTTGGGTATTTGAATGCTGACATGATGCTCCAAAGAAATGCTCATTGGAGC1780.2112910118228004No Hit
TTTTGAAGGGAGGGTGCAAAGTCACCCCCATTTGAGAACCGTTCTCCATAGG1710.20298181472864535No Hit
TCGCCTGGGAGGTATGCTCTGCGCTTTGCTTTTGTTTTGAAGAAAGGCATAA1710.20298181472864535No Hit
TCGCTCGGGTACAAAAATCAAAATTAATTAAAAAGTTAAATCTAAGACCTCA1670.1982337021034139No Hit
TTGTGAGGGGAATCTTGGTTTCACTACAATTAAAATTCACTCCTTTCCAATC1660.197046673947106No Hit
ACAATAGGGAGATTTTTACCTGCTAAAACAATATTATTTCCAGTAAAACCTC1640.19467261763449029No Hit
GCGTCCAGGGCTTCCATTCTAAGGTACTTTTATAGTTTCTAGCAATTAGTTT1610.19111153316556667No Hit
TAACGCAGGGAAGACCAGATGGCTAATCTAAACAGAGAGAAACTCTAAGAAA1590.18873747685295095No Hit
ATTTTAGGGATTTCAAATATACCAGATGTTACCATAGTAAGGTTAGTTATCT1580.18755044869664309No Hit
GGCACTGGGACTACTGACTTGTTGGCTCGCGGGATTGATGTGCAACAAGTGT1570.18636342054033522No Hit
TTTACAGGGGTGGCCACGCAGTATGGCTGGGTGCTGGATGCTGAGGTGCTGC1540.1828023360714116No Hit
TCAACAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1520.18042827975879588No Hit
TCTCTTGGGATCACCTACCATCTCACATCAGTCAGAATGGCTGGTATTAAAA1500.17805422344618016No Hit
TTAGCTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1460.17330611082094866No Hit
GCTAGGGGGGTAAAATGAGTGAAATCTGGGTGTTGGTAGATTGTATCAATTG1460.17330611082094866No Hit
GCTATAGGGAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATT1450.1721190826646408No Hit
TGCGCATGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1440.17093205450833293No Hit
TCCTGGGGCTCCTTCTAGCTGGAGGAATGCAAGGCTAGCTTGTCTGGAGCAC1440.17093205450833293No Hit
TAAAAGGGAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGA1410.16737097003940934No Hit
AACTTGGGGAGCCCCAAGAAATTTATTTCTCACGGCTCTGGAGGCTGGAAAG1400.16618394188310145No Hit
GAAACAGGGAATGCATAAAATAAATTTTTACTTAAAATTTATAGTGAGAAAT1390.1649969137267936No Hit
GGGAAGTGAAGGGATCTGCAGATTACAAAAGTAAGAAGAATCATTGCAAGCA1390.1649969137267936No Hit
GGCCGCGGGGTAGTCGTCCACGCCGTACTTTTCGGTATTCTGGAGAAAGCCA1390.1649969137267936No Hit
ACATCCCCAGTTACTTAGACAAGGACGAGCTCTGTGTAGTGTGTGGTGACAA1390.1649969137267936No Hit
TCTGCAGGGACGTTTGAGATAATTCTAGTACAAAGTATAATAAAACTAGATG1380.16380988557048573No Hit
GTTCGCGGGAGGGACCCGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTT1380.16380988557048573No Hit
CCACCTGGGATGTGAAAATAATATTAAACCATTTACCAGATGTCCAGCAATA1360.16143582925787No Hit
CGCTTGGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1360.16143582925787No Hit
AGCGCAGGGCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGT1360.16143582925787No Hit
ATGCTGGGTACCAGTGTCACGTTAGGGTGTGAGGTGAATATATAATTTACCA1350.16024880110156214No Hit
AGCACTGGGGTCAGACAGAACAATGAGTAAAGTAGGAAGGCAAATAGCTACA1340.15906177294525425No Hit
AACGGCGGACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGC1330.1578747447889464No Hit
GGAACGGGCGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGA1330.1578747447889464No Hit
GCGCCGGGAGTAATAATTATGGAGTGTTTTCAAAGCCATGATATAATTTTTA1330.1578747447889464No Hit
TCTCATGGGAACTAAAAATTGAGGGTTTGTTACATGCTTTCTAACAGAAAGG1320.15668771663263853No Hit
GGCAATGGGTATGGGGAGGATATCAAAACAGAGGTTCCAGAAGAAGATGCAC1320.15668771663263853No Hit
TCTGCCGGAGATATGAGTATCAAAAACATGCTATGGTAAAGAAGCCAAAAAT1320.15668771663263853No Hit
TGACCAGGGAGATGTTAATTTTTGTATAATTCATTCATTGCACAAAAGCAAT1310.15550068847633064No Hit
AATCAAGGGAGGCCTGGGACATGTATTTTTTGATATACCGATAAAAGCTGTG1310.15550068847633064No Hit
GAGTTGGGGTGTTCTCTATGCCTCTAAAATGATGCTGTTTTCTCTGCTAAAG1300.15431366032002278No Hit
ACAACAGGGTTTGCTATCTTTTCCTAGGCAGCCTGCATCTTTTGTATAGTAA1300.15431366032002278No Hit
CGAACGGGGCAGTCGCTCTTCCTCAGGCGGCGGCCATGGCGGGACAGGAGGA1300.15431366032002278No Hit
ATACGTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1300.15431366032002278No Hit
GAGTCTTTAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAA1300.15431366032002278No Hit
GATCTGGGATGAAATCAATCAAAGGGAAACTTGAAGAACAGAGACCAGAAAG1290.15312663216371494No Hit
GAAACGGGGACAATTGTTTTTGTCATCATTTTCTGAATTTCTTTCTCTTCTT1290.15312663216371494No Hit
ATATCTGGGATGATTTGAGAAGTGGATTGTTTCCCTCTCTTCTACGAGTTTG1280.15193960400740705No Hit
GAATTAGGGGATCTCAGAAGGGGAACTGGAAAAGAAAGATAACATAGAGAAT1270.1507525758510992No Hit
GAGGACTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1270.1507525758510992No Hit
CTAAGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1260.14956554769479133No Hit
AAGCTAGGGGGCTGGTGACCTCACTGTCAGAGAGCTGGTACAACCTCCTGCT1260.14956554769479133No Hit
TAAATAGGGGCAGCCTCCATCTAGGGTGGAAACAAATAAGTTTTCCTCCAAG1240.14719149138217558No Hit
CTTCAAGGGTATAATCTATTGTTTCAAAACTAACAGAAGAGAGGAAAGGAGG1230.14600446322586771No Hit
TTTGGCGGGATGGTCTGGGCGACTGTATCATCAAGATCTTCAAGTCTGATGG1230.14600446322586771No Hit
AATTAGGGGATAAAATGGATAGTTGAAAGGGGGGAATTGGCCATCAAAGATG1220.14481743506955985No Hit
ACACGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCA1220.14481743506955985No Hit
TAAATAGGGTAAAGCATCTCTAATATTGATCCTAAATATTTGTAAGTCCATG1220.14481743506955985No Hit
ACGTTGGGGATGAATAAAACCCCAACTTTAAAGAAATACAAATTAAACAATA1210.143630406913252No Hit
AACGGGGGAAGACTAGGCATATGCTTTCAGATAAATAAGGAATTACTCCAAT1210.143630406913252No Hit
GATTAGGGCTAGAACACTGATTCCCCATCCTATCCAGAGATTAGTTTTAGTT1210.143630406913252No Hit
GTTAGGGACTGTGGTAAATGATTTAAAACACTAGTATAGTGTTGTGTAGCTT1210.143630406913252No Hit
AGTCCAGGGCACTCCCTGGAAACAGGTTCAGCATGTTTGCACTTGTTATTTT1210.143630406913252No Hit
CATCTTGGGCATATGACACATTTGACTTTGTAACCTTCTTTTTCATACTAAC1200.14244337875694413No Hit
GAATTTGGGATTCATATATCTCAAGAAATGAAAGCAATGAAAGAGCTGTGAT1200.14244337875694413No Hit
GATCTAGGGAAGGAAAAAGTTATTGAGGGCAGTCTTCATGGTTGAATATCCT1190.14125635060063624No Hit
TAATGAGGGCGATCTAAGTAAGGGAGGCTTGAGCCAGAATCAAGCAGCTAAG1190.14125635060063624No Hit
CTAAAAGGGACTCCCAGCTGCAAGGACCGTCTCTCAGCTGCGCTGGGAACCG1190.14125635060063624No Hit
GCACACGGGGATTCCTCCAATGAGTACTTTAATTTAGTACTCTATTCAAAGT1190.14125635060063624No Hit
TACCAAGGGAGCTGTCAGACCTGCACAAGCAAAACCTGGAAATCCACCGGAA1180.14006932244432838No Hit
AGTCATGGGATAGAAAGTGAAGATTATGGCCAACAGTTAGAAATCGTATGTC1180.14006932244432838No Hit
CGCATCGGGTTATCCTTTCAACTTTCTTTAGGTGCCAGCATTATTTTCATAT1170.1388822942880205No Hit
AGTAGGGGGATTTGATGCTCATGGATAGGAAGAATCAGGATTGTTAAAATGG1170.1388822942880205No Hit
TATGTTGGGGTTCTTAGTTATGTAAATGGCACAATAAAAATCGAGAATAGGA1160.13769526613171262No Hit
CATTACGGGTCTCCCAAGATATAAGAGGCAGCAGCAAACGTGCCTATTGACG1160.13769526613171262No Hit
GTGATTGGGATCGTGTCTGACCGCAACCTGCCCTTCGTGGCCCGCCAGATGG1150.1365082379754048No Hit
AAATCGGGGACTATAAAATAGACTAAATATAGGCGAGTTCAAGAAAAAATTG1150.1365082379754048No Hit
CACACCGGGCCACAAGGCCCGCCCCTTCTTCAACGACCTGGTCAACTTCATG1150.1365082379754048No Hit
TAACTTGGGGGGCCTAAAGTGAAGACTGTGCTGTCGTTAAGAGCTTTCGAGG1140.13532120981909693No Hit
TTGGCTTGGGGAAGTGTCCCTCACATTATGTTTGCTCTGTTTCCTGTATGAG1130.13413418166278904No Hit
GCATTTGGGATGATAATAACGAGCAAAACTGGTTAGATTTTGCATGAAATGG1120.13294715350648117No Hit
GTAAATGGGAACACATAAAAAGCTACCCAAGGACTCGAGCCTGAACAAAACC1120.13294715350648117No Hit
GGTGGCGGGACCGTGTCCCTGAAAAGAAATGCTAGGACACAGGATTTTGTGA1120.13294715350648117No Hit
GTGCCGGGGAGATCAATTTATGTTCTTGTAATAAACTTATTAGAAATTGGTG1120.13294715350648117No Hit
GCTGGCGGGAATAGCCAAAATGGATAAACAACCGAAATGTTGATAAACAGAT1110.1317601253501733No Hit
CTCAAAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1110.1317601253501733No Hit
CATTAGGGAAAGAGAGTCACTTTTGACTCCATCAACTTCAAGGGGACAGAGC1110.1317601253501733No Hit
ATAGTGGGGAAGCTTTTCCTATTGTAGTATAAACCATTTTTTTGTAGGAGAT1100.13057309719386542No Hit
CTTGATGGGACAGATTAAGGGCTATGGCTGGTCCACTTCTAGAAAACCACAG1100.13057309719386542No Hit
TTTAATGGGTATTTATAAAAAGGAAAAGTAGTTTTCATATTAAGTTTTTATT1100.13057309719386542No Hit
CTTTTAGGGAGCTACTAGCTAGTCCCTTGCTCGCTCAGCTCCCCCAACTTCT1100.13057309719386542No Hit
GGGTTTGGGAGAGCCTCCTAATCAAGTTGCCTAGAGAACATGCCACTAAAAA1100.13057309719386542No Hit
ATTTTAGGGATGCTCCAGAAGTTAGAATAGTCCAGACAGGAGCTTACAGTGG1090.12938606903755756No Hit
ACGGGGGAGTTCAGCAAAGCCGGAATTCTGTGTTGAACAGATGTCTGTCTCC1090.12938606903755756No Hit
TCAGTGGGGATTGGCTTTTAGACCTGTTTTCACCATTTATATTATGAGTCAT1090.12938606903755756No Hit
TAGACTGGGAGGCTGAATCAAAGACATTTCATCCACCAATATCATGTGTAGA1090.12938606903755756No Hit
GCCTATGGGATATGCCAAAATGTATTTTAATATTTTGTGTTAAGAGGATGTT1090.12938606903755756No Hit
CTTACTGGCTGTGTAGGCAACTGACAAACACTGATAAAGACAGATGGCCATG1080.1281990408812497No Hit
CGACCTGGGATGAAGCTCTTGTTTTCGATGTGTGTTTGTAAAGGGAAAATTA1080.1281990408812497No Hit
AGAGTAGGGATTGAAACTAGTATAGAACATTTCCATCTTAATCCACCTGTGA1080.1281990408812497No Hit
GTAGTTGGGAGAGAAGAACTAAATGAAATACAGACTTAAATATAAAGAATCA1070.12701201272494184No Hit
TTAAATGGGTCTCAAGAAGGGAGAAGTGAAAAAGGAGACATAACTAATACCA1070.12701201272494184No Hit
GCATTAGGGAGGTCTTTATTTACTATGAGACTCCAAGTGCTTTAATATAGTT1070.12701201272494184No Hit
AAGTCAGGGAGCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAG1070.12701201272494184No Hit
AACTTTGGGATTGGAGAAAAAAAACTGCCAGAGGAGGAGTTGCCAATTGGCA1070.12701201272494184No Hit
ACATATGGGATATCCAGTAGTACCTTTAAAGTAACACTTTGTACATAACAAA1060.12582498456863397No Hit
TTCGACGGGAACTCAGTAAGTCCCTTCTCTCTTTCTGAACCCACAATGCCTC1060.12582498456863397No Hit
ACAGCGGGACTCCTTAGCAAACGTTTCGTAAGTACCCTCTGTCTGTTTGCTA1050.12463795641232611No Hit
GTAGCCGGGAAGTCCTGTTGATTCCCTCCTAAATAAACCTTGAATCTGATCC1040.12345092825601822No Hit
TCCTATGGGACATGCAGTGAGGATGTCTGTATCACTTCCACAGAAGGATGTG1040.12345092825601822No Hit
TATTTAGGGACAGCCCCACGAGCCATGGCTGTGCTGGAGTCACTACGGGTCA1030.12226390009971036No Hit
ACTTGAGGGATTTGGAAAGATGAGCAAGAGGTCTGCTTCCTTCATTTTACTT1020.1210768719434025No Hit
AAAATCGGGATCTAAAAATATTACAGTAGAATCTGAGTGTAATATGTGTAAC1020.1210768719434025No Hit
TCATATGGGAGGATCCCATGTTTTTCATTTTACAGAGTTGTTGAAGCAGAAG1020.1210768719434025No Hit
ATGAGAGGGAGCCTCCAGAAGGGGATAATGCACTTTGTGGAGAAGTTTCTGT1010.11988984378709462No Hit
GGTGGCGGGAGAGGAAGACCAAAAAATTCAATGTCTTAAAAATATATTTAAT1010.11988984378709462No Hit
GTGTAGGGACCAACGTAACTTTCTAATCATTTATTTCAGTAATAGCTAGAAG1000.11870281563078676No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGTCGCAT990.1175157874744789No Hit
TCACCTGGGGATGGCTTCTCTTTATTCTTGGCCTGGGTTGTCTGCTGGCACT980.11632875931817102No Hit
TCTGCAGAGTCCAAAAGGGACAGTTAGAAAAACAAAAAAAATTTAAACTAAC980.11632875931817102No Hit
TGCAAAGGGAAAGAGAGCTAACTGTTATCCTGACTTTATTCTTTATGAAGAA980.11632875931817102No Hit
GAGCACGGGATAACTTTTAGTTAATTGCCATTGAGCACCTGTTCTGAGGAGG980.11632875931817102No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTCGCATATCCTGTCTCTTATAC970.11514173116186316No Hit
TAGTGGGAAGCAGTAAACTGGATGATGTTGCATTAGAAAAACATCAATAATT970.11514173116186316No Hit
ATTTTCGGGAGAGGAATCTAACTTCAACCCTTGATGGAAGGAATATAAAGAA970.11514173116186316No Hit
CTCTATCGGGGGGACACACAGCTCAGAGCCCTGCTTTCTGAGGGGTGGAGGA970.11514173116186316No Hit
AGGCAGGGGATTTGTGAGAAGTGCAAGCCATGTTTATCCTGAATTTTTACTT960.1139547030055553No Hit
GTTGAAGGGAACAGAGCATGACTCTATCTCTAAAAAATAAAATAAATTAAAA960.1139547030055553No Hit
CACCGTGGGAGAAATTATTTGATGTAAATTTCAAAATGATTATAGGAATTAA950.11276767484924742No Hit
GTAAGCGGGGAAAATGTCAAGAGAAAGGCCAAAGATTTGTACTTTTTCACTT940.11158064669293956No Hit
GCGGCTGGGAGGCTCCCTGCCATCCAAGAACTCAACCTAGGGAGCAGTGACA940.11158064669293956No Hit
ACCATAGGGAACGAGATCAAAGTCGTATACCTGAGGTGCACCGGAGGTGAAG940.11158064669293956No Hit
ACGCCTGGGAGTTTATTCAAACAAACCAATTCTAAGAAAGCTACATTTTATT940.11158064669293956No Hit
ACAAACGGGACTGATGAACTTTTAGGGCATTTCCAGTTTTTTACTATTAGGA940.11158064669293956No Hit
GCTTAAGGGATTCATTTCATTGTTTAATATTAGAAGTGTTTTGGTATTAGAA940.11158064669293956No Hit
CTACGCGGGAGAGTACGTGGTCCAAGCCAATAAAGCTCAACAAAACCCAAGC940.11158064669293956No Hit
GCTTTAGGGATATAAAATTGATAGCAAATATTTACTTATATTTCTGAAATTT930.1103936185366317No Hit
TTCGCTGGGAGTAGTCCAGTGTGAGCTTGAAATACTCCTAGATCCCGTCAGT910.10801956222401596No Hit
GAGATAGGGACCTGAGGCCGTCCGTGTGGCCCAGGGCCCCAGCTGCCTTTAG910.10801956222401596No Hit
CTGGATCAAGGGCAGCTCTGCCATTTATTGGCCATGTAATCTTGAATAAGGT910.10801956222401596No Hit
GTTAGCGGGCTCCTGCCAGACTGAGCTGCATGAGCCAGAAACCTTGCCTTTT900.1068325340677081No Hit
GCTACAGGGAACTGCATAAATAGAAGCTGCATCTCCATTTTCTGATTTTGGA900.1068325340677081No Hit
GCACCAGGGAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTG890.1056455059114002No Hit
CTTGCTGGGACCTGGGACATTGTAATCATAAAATAACAGTAAATTCCAAACC890.1056455059114002No Hit
TTATGCGGGAGCCCTGCTTTGGCCAAGCGCCACAACCAACCTTTATTCTTAT890.1056455059114002No Hit
ACTACAGGGAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTG890.1056455059114002No Hit
CCTACCGGGAATGATTCAGCATGTGATTGCAGCAGGGGTCTCTGCCCCCTCG890.1056455059114002No Hit
AAAACTGGGATTGTTAAAGTCACATGCATCATTGTGAACATTTCACAAAACA880.10445847775509234No Hit
GATCTAGGGATGTCTATCCCCAGCGAACTTCAAGCATCTTACAACATGGACT880.10445847775509234No Hit
ATAGGCGGGCAGATTCTCAGATGTTTGTTGTGTGGATTTTGTTTAGTTGTGT880.10445847775509234No Hit
GAGCTAGGGGCATTCCAGAATTTTATGCAAGAATCGATGGCACAATACTGGA870.10327144959878448No Hit
TGGACTGGGATGCAAGTGGAAGAGAGAATAGTTGAAAATGTGAATGAAAGTA870.10327144959878448No Hit
GTAGGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC870.10327144959878448No Hit
AGCGCGGGAGGGTGTTGCAGAATTCTTCCCACTCAGAAGAATGGCATATTCG870.10327144959878448No Hit
TGTGAAGGGGAGATAAGCTATAGTTGGGGAAATTTGTGGGTTTTTTTTAAAT870.10327144959878448No Hit
TTTAATGGGAAGTGCTCTGAGATCACCTTCCACACCACAAAAACCCTTCCCA870.10327144959878448No Hit
GGCCAGGGGACTTTTTGGCAGTTGGATAGGAAATGAGACATTCTTTGGCAGC870.10327144959878448No Hit
CCGAAGGGAGGACAATTATTATGTCCAATTAATATGTTTATGTTTGTGAGTC870.10327144959878448No Hit
TATGCAGGGATGGAAATATTTTAATTTCATTTTTTAAAATTTAAGTTATTGA870.10327144959878448No Hit
GAAACTGGGAGATTTTTAGCACAAAAATAGCCATTGTAAAGTGTTAAAATTT860.1020844214424766No Hit
GGTCTGGGGATGAGAGAGGATCATGGACAATGAATAAATGCACACTTCTGAC860.1020844214424766No Hit
CGGCTGGGGCTTAGCACGAAGGCTAGAGAGGAATCCCACTGGAGTGCACGCG860.1020844214424766No Hit
TGCTCGCGGGGGTGAATAAAAAGGACAGATAATGAATGCTACAACTCAGTGT850.10089739328616874No Hit

[WARN]Adapter Content

Adapter graph