FastQCFastQC Report
Sat 31 Dec 2022
SRR5845001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119171
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCGTAGATCTCGTATGCCGTCT5690.47746515511324067No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCGTAGATCTCGTATGC5060.42459994461739853No Hit
AGCATCGGGGACGCTCTTTGATCTAGCTATGGGGTGAAACATGAGGCAAGTT1670.14013476433024813No Hit
TCTAGTGGGGACAAATAGGTTCTAATTAAACTAAAGAGCTTCTGCACAGCAA1660.1392956340049173No Hit
ATCAATGGGTGTACAGGTCAGTAGCTGCATTAAGTACATTCACATTATTGTG1570.13174346107693985No Hit
TTACAAGGGAAGGGGCCAATTCTAAGTATTCTTCACGGCAGCCAGAAGTTAA1550.1300652004262782No Hit
TTTTTAGGGAAAGCAGACAAAAATAAAGAAAAATGAATGAAAGGAATGAACA1530.12838693977561655No Hit
GGATTTGGGGAGATCAGTCTGTAAAATGGTTTCACAAGAATGTGAAACTATT1520.1275478094502857No Hit
AAGTGTGGGAATGGATGCACGGTGAATGCATGAATGATTGAACGACAGAAAA1510.1267086791249549No Hit
CCACACGGGGAGTTCTGGGATGTTAAGTTGAACTGTAGCTCCACGTTTAGAC1510.1267086791249549No Hit
CTGTGTCTGGGATTTTAAAGGTCCAGAAAGAAATTCTAATCTGTGTGCCTAT1490.12503041847429325No Hit
AAGCCGGGCGATCTTGCTTAGGGGTATTTTTTTAAGTTTCAAACTCCATTCT1480.12419128814896241No Hit
AGGTTCGGGTATATTTAAATCCAAGAGAAACTATGCCGAAAAAAAGTGTTAT1480.12419128814896241No Hit
TTTTCAGGGACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTTTGAGCCA1460.12251302749830076No Hit
GCGATAGGGATACAAGCTGCAGCCTCTTTCCTCGTTTCTAGTCTCAGAAGGA1460.12251302749830076No Hit
GCTAATGGGATTGAGTCCGGGTGATAGTTTCTCCACATTTGATACTCGTATG1430.11999563652230827No Hit
TGACATGGGCTTGTAGATGTTTTTACAAACTCACATTTGAAATCTAAATAAG1430.11999563652230827No Hit
TAACTTGGGCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCC1410.11831737587164662No Hit
AGAAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1410.11831737587164662No Hit
CCTAATGGGGAATCTGGCTGCTGACTTGGCACACAACTTCACTGATGGTCTG1400.1174782455463158No Hit
GGGAACGGGTATGTATGCCTATCTAATTATAAGTATCATTCACACTGTCTCC1380.11579998489565414No Hit
ATCCGAGGGAGAGGAGGAAGCGGCGCTCATGGGGTTGCAAGGATGTAGAGGA1380.11579998489565414No Hit
AGGCAGGAGTACACAGAATAGAATTTAGACTGTCCCTTGAGTAGAATCCACT1360.11412172424499249No Hit
TGTCTAGGGAATTAAGGGTTCTTAAAAATGTGTAAGGCACATTTTAGTGTGT1360.11412172424499249No Hit
AGAATGGGGAATAATTAGTATAAGGATATGACCTAATAAATGTCTCCTTACC1350.11328259391966165No Hit
CTTAAGGCGGAGTCACAATCCAGGGACTTGGGTATACTGCAAGCTGAGATTT1350.11328259391966165No Hit
GCTCTTGGGCTGATTTAAAAAAACAACAACACAGGATTGAATTAAGTAGAGT1340.11244346359433083No Hit
GATTTTGGGAGAGGTAAGTATAATGAATGTTTTATTGTATCTTCTTTGCAGC1330.111604333269No Hit
ATACAGGGATGGAACTTGCAGAGCAATGAGAACCAAAACCATGACCCAGGAG1330.111604333269No Hit
TCACGGGTCTAGAAGCGGGAGATAAGTTTTTTTCTCTTTGAAAGATAGAGAT1330.111604333269No Hit
AATCTTGGGTATTCAAGATGAATTTAAAAGTCAACCCTTCACACAGTTTCCC1330.111604333269No Hit
CACAAGGGACATCCAGGTGATCTCAGAAAATTGTGCAGTGAATAGGCTACTG1330.111604333269No Hit
TTGTCAGGGCTGCAGAAAAGGCATACCACGAGCAGCTGTCGGTGGCAGAGAT1330.111604333269No Hit
TACCCCAGGGTTGATTTTAATACGGTCATCATAAAATAAGTTAAAGGACATT1310.10992607261833835No Hit
AAAGATGGGTCTATATGGAAAATCTCAAAGAATCAACATAAACTCATGGAAA1310.10992607261833835No Hit
GCGCCCGGGTATTCACATGACCTACAGGATGTCCCATCTGCAGGGCTGAGTC1310.10992607261833835No Hit
GCTGCGGGGAAATTTGGGTGTTTTTAAAACCTTGTTTGGGGTTGTTCCTGTC1300.10908694229300753No Hit
AACAGTGGGTACTACTAAATTGTCTCCACATGGAAAATTTCTTGTGACATGT1300.10908694229300753No Hit
ATAAGCGGGCGATCTTGCTTAGGGATCCTAGAGAGAAATCAAAATAATTGAG1290.1082478119676767No Hit
TTTTGTAGGGATGCCAATTTGGGTTCTGCAGGTACATAGAAGTTGCCAGCTT1290.1082478119676767No Hit
TGTCTCCGGGGGCAAGGTGCTCTAGGAGGTCTTCCTGGCCTCCTTGAACTGT1290.1082478119676767No Hit
AATCTCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1290.1082478119676767No Hit
ACCATGGGGTGAGACAGAGAAGAAATTCAGGAGGTTCCCCATCTCCAGAGTT1290.1082478119676767No Hit
GCAAATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1280.10740868164234588No Hit
GTAACAGGGAGAAACTGGGTTCATGTTTTCAGATCCTCCAGGACAGAAAGTT1280.10740868164234588No Hit
CTACGTGGGGGATGAAAAGTTTAATCCAACAAGAAGATATAACAATTTAAAC1280.10740868164234588No Hit
CATAATGGGAAATGTTCTATACAAATTTGCATCACTTCTTTTCTTACAGCTT1280.10740868164234588No Hit
GCTTAAGGACAAGATTGAAAAGGCTGTGGTGTCTCAGCGCCTGACAGAATCT1280.10740868164234588No Hit
CACAAAGGGAGCATGTTAATCATTATGGATCCTCATTTCTTCTTCCGCCTTT1280.10740868164234588No Hit
AACGTGGGATATTCATATTTGCAGTTTTAAAAACGATGATCAATTGACTAAA1270.10656955131701504No Hit
ACACATTCAATGCAATTCCCATCAAAATTCACTATTCTTCACAGAATTAGAA1270.10656955131701504No Hit
GGTTCAGGGATGGTGTGATCTTGAGCAAATTAATTAAACTCTCAGCTTTTCC1270.10656955131701504No Hit
TTGTTAGGGGGTCTCCGCGGATGACGAGTGGCTGGATAACATGGAGTCGGGC1270.10656955131701504No Hit
TCTTTAGGGGCAGTGAGTTATTTCCCAAGTGGTAAGTAAACCTTGGAAGAGA1260.10573042099168421No Hit
ATGCAGGGGCGGCGGCGGAAGTGGCCGGCGAGCCCGGTCCCCGCCGGCACCA1260.10573042099168421No Hit
TATATTGGGGACTTTGGCAGAGACTGACTTTTTAAATCACTAGAGCCTAGCA1260.10573042099168421No Hit
ATCGTCGGGGACTACAGGATGTGGCTGACAGTGCTCACTGAAAGGAGAGTTG1260.10573042099168421No Hit
TTACTTGGGACAGTGAAAGAGTAAATTAGAAAGTGAATGGATGACTGTTCAT1260.10573042099168421No Hit
TGATGGGGTCTTTCAGTCCAGGACAGATTTTAACTTTTACAAATAAGTGAAT1250.10489129066635339No Hit
CTCCCCGGGGTCTGCCTATGCAAATTTCTATAGCATTTGGGGCCCAACCTAA1250.10489129066635339No Hit
CTAACTGGGCCCCTGAGGTGCAGGGGAAGACCAAAGTTTGCAACTCGAACTG1250.10489129066635339No Hit
GCAACTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1250.10489129066635339No Hit
TAGCTGGGGAGATAATTTTATTGTTAATTTCATTCCAGTTTAGCTTCCTCAT1240.10405216034102256No Hit
GTAGCCGGGCTAGTGAAGGGATGTCAAGAAATTACATTTTGCATGTCTTATG1240.10405216034102256No Hit
TCAGAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1240.10405216034102256No Hit
TGGCATGGGGGCACCGGCCGCGCGGCGGGAGGAGGTGCCGGCCGAGCACCGC1240.10405216034102256No Hit
TCTATAGGGACTGGCCGAGTCTCCGACTGTCTGTGCTTTCACTTACACTCCT1230.10321303001569174No Hit
TACAGTAGGGATTGTCCAGGAATTTAGAAAATGATTTTAAGAATTAAGCTAA1230.10321303001569174No Hit
TTCAGTGGGGAGAGTCGGATTCGCCGCCGCAGCAGCCGCCGCCCCCGGGAGC1230.10321303001569174No Hit
AGATGCGGGCAAGAAGTGGAGAAACTACTGGGGAAGCAGGATAGGTTACAGT1230.10321303001569174No Hit
ATTATTGGGAAGTGTGAGTTGCTTGATTTCTTTCTGCTATGCTTCAGCTCAG1230.10321303001569174No Hit
CGTCATGGGATTTCAATGCATTGCATATTTAGCCTTCGGCATATTTTTCATG1230.10321303001569174No Hit
TCTGCAGGGGGATTTGCCTGTATCTGTTCCACTCTGTATCTTGGCCTTTCCC1230.10321303001569174No Hit
ACTAGTGGGAACTATCTAAAACCTAATTGCAAATTGACCACAGACCTCTAAC1220.10237389969036091No Hit
GTTGCCGGGATATTAGTTTAAGAAAAACAAAGTATGGGTGGGAGGAAAGACA1220.10237389969036091No Hit
ACTCACGGGAGCCAAGGGGTGGTAGAAAGGGGTGAAAAACTGTCATTTGCAA1220.10237389969036091No Hit
AACCTGTGGGACCATCTAGTGATATTGAGTCATGTTTTCCACAAGCAATTCC1220.10237389969036091No Hit
TCACCTGGGGGCAGAGGTGGAGGCGCTTTGAAAGCCGTCATTGTGTGGCACT1220.10237389969036091No Hit
TCATACGGCAAGATTTTGAGTATATAAATAGAAATAAAATACATTAACTAAA1220.10237389969036091No Hit
GCACAGGGGGGAAAATAAAGAAGAAATGGTCAAATTCCTAGACACATACAAC1220.10237389969036091No Hit
CCACATGGGGATAGTCAATATAGAAAAGAATGTAATTGACCTCATAGAGCTG1220.10237389969036091No Hit
TCATTAGTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1210.10153476936503009No Hit
ATAAGTGGGGCGATGGATTCTGGACTCCACCCTCCAAGTAATCTTTGAGGTG1210.10153476936503009No Hit
ACTGGCGGGATCACAGTGAAAGGCAAAATTATTCACTCAGAAGTAATATAAA1210.10153476936503009No Hit
ATATTAGGGATACACGAGGTGAGCCAGATTTTGGTTCTTAATACGTGGAGCT1210.10153476936503009No Hit
GGCACTGGGGTGTAGGTATTATATGACAGGAAAGAATCACATCTTAAGATTT1210.10153476936503009No Hit
GCCATGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1210.10153476936503009No Hit
TAGCACGGGACTCTAGTATAATTTAGAAAAACTAAGCAAGAGATTCTCCAGT1200.10069563903969926No Hit
CTTCTTGGGTCATCTTGTCCTTCCTCAGTTGTACTCTCATGGGAAACAGCAG1200.10069563903969926No Hit
CAGTTAGGGATACTGACCAATGTACACTATTGCTGCTTTTTAACTTTTGTGT1200.10069563903969926No Hit
GTCATTGGGGAAATCAAAATGGAACAGGCTAAAACAGAGGATGAAAAGTCCA1200.10069563903969926No Hit
GGAGTGGGGGGTTTCAAAAAACATTTTTCCAAATGTACTATTAGAAATAAAT1200.10069563903969926No Hit
GAGGCAGGGAAGCTGTATCTGTCAGCTACCACCCTGTGCTTTAAAAATGCAC1200.10069563903969926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)