FastQCFastQC Report
Sat 31 Dec 2022
SRR5844997.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844997.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177358
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCGTAGATCTCGTATGCCGTCT6520.3676180380924458No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCGTAGATCTCGTATGC6390.3602882305844676No Hit
ATCGCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA2140.12065990820825676No Hit
CTAGCAGGGTCATCTAAAAAACACGGTCTCAACCTGGCCACCGTGGGTGAGG1890.10656412453906787No Hit
TTCAGAGGGATGACATAAAATAGAAAAAGACTGCCAGCCAGTTGTTCTTTGT1850.10430879915199766No Hit
AGTATCGGGATAATTTGCAACCTTGTCTTGTCAACCTTGCTGATCCAGCTTT1790.10092581107139234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)