FastQCFastQC Report
Sat 31 Dec 2022
SRR5844995.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844995.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176974
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCGTAGATCTCGTATGC6510.3678506447274741No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCGTAGATCTCGTATGCCGTCT6500.36728558997366845No Hit
ATCGCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA2120.11979160780679647No Hit
AAGGTAGGGATTCACAGATGGGATCTAATAAAATGAAAGAGCTTCTGCACAG1970.11131578649971183No Hit
AGTATCGGGATAATTTGCAACCTTGTCTTGTCAACCTTGCTGATCCAGCTTT1870.10566523896165537No Hit
ACAACGGGGTTCATAAAAGCAATTGAAATTACGCATCTCCATGAACTCCCAG1820.10283996519262716No Hit
TGCTGGGAATAAGCAGAAGGGGAAAAAAAGACCGTCAATGACCAGAAAAAAA1790.10114480093121024No Hit
GCTCTTGGGTGATTGGTTGGTTGGTTGGCTGGTCGGTTGATTGGCTTGTCTT1790.10114480093121024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)