FastQCFastQC Report
Sat 31 Dec 2022
SRR5844847.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844847.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140927
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT5340.37891958247887203No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC4800.34060187189112096No Hit
TGTAGTGGGGAGGGTTCGCTCGCCGGCTCCGACGCAGACATGGTGGACTGAT1670.11850106792878581No Hit
TGCCGAGGGTGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1660.11779148069567932No Hit
CTAGAGAGGATTCTCTGCAGCGAAGAGCCTCATAAATTCCCCTTCACAAGGG1570.1114051955977208No Hit
CGCGCGGGGAGTTTTATCATCCACATTGCTGACCTGGAAGATGCATCATTGT1550.10998602113150781No Hit
CAGAGTGGGGTAATTCAGAAGAAAAGCATATGTCTGCCATGGGACTATTGCA1540.10927643389840129No Hit
GAACATGGTGACTCGGGAATTGCCTGTAAATTATTATAGACAATAGATTGCA1530.1085668466652948No Hit
CTAAAAGGGGTCCTTTGCCCCTTTTTAATCAATTCCTTTTAATTTGTTATTG1500.10643808496597529No Hit
GTTTGGGGGGCGGCGGCGGTGGCGGCTAGGGCGGCGGCGAATAAAGGGGCCG1480.10501891049976228No Hit
GACTCAGGGTAATAGCCCTCCAAATGGGTGTGACGTATTTTGATTCTATGTC1460.10359973603354929No Hit
AGATGGGAGTCCTCGAAAAAGAAAAAGGGGCTGCTTTCCAAAGGCAAGAAAC1450.1028901488004428No Hit
TACAGACGGGCTTGAAAAGGCGTTGGTATCTTCATTTTACAGTTCATTAACC1450.1028901488004428No Hit
TTTTATGGGATCCTAGGGCCTAATAAGAAGGATGGGCATAACCTCTAACCTA1450.1028901488004428No Hit
ACCTTTGGGAAACCACTGAAGAGGACCTCTCCATAGACATTGGTAGACACAG1450.1028901488004428No Hit
TCTACTGGGGAATCCAGAGATTAAAAACAGAAATATGGAAAAGCTATGTACT1450.1028901488004428No Hit
CGTAAAGGGACCATTACCCAATGTGCCTTTAAATATAGTTTTATTATTTAAT1440.10218056156733628No Hit
AAATTGGGGAAGAGATAACAAAGAAACAGAAGACATGAGGAAAAAGGGAAGG1440.10218056156733628No Hit
GTGTGGGGGGGGAGATGTGGTGAAAATTGCAAGAGAACTAGAATTGGAAGTG1430.10147097433422977No Hit
CGCGCTGGGATTGCCTAAGAATCTGTAAATTTTGTTGCTCAACTATAAAATC1430.10147097433422977No Hit
TCGAAAGGGATCTTGAAGAATTTGGAGTTTTTCAGGGCAATTCAAATGACCT1430.10147097433422977No Hit
ATGCATGGGAACTCACTGGCTGCCTGGCTGACGGATGCCCGCACCCTGGCCA1430.10147097433422977No Hit
CAAGTGGGAAGGCTGCAATGAGCCGTGTTCATGTCTGTCTCTGAATAAATAA1420.10076138710112328No Hit
CTAGCCGGGAATCCAGTCCAGGTAACTAAAGAAAAAAACTTTTTATATTAAT1420.10076138710112328No Hit
AGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAG1420.10076138710112328No Hit
GCTTGAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1420.10076138710112328No Hit
TGGCAGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1420.10076138710112328No Hit
TGCCACGGGGAAGTTCTGGAAAAACAAACTGCAATCAGTCAGCTGTGAAGGG1420.10076138710112328No Hit
TCAACGGGGAGTGGCTACTATGAGCAAATATATGCAAATGAATTGGAAAATC1410.10005179986801677No Hit
CGTTCTGGGAAGCCCTGGCCGAGTGAGCTCCAATGCTAACTCATGTGCCGAT1410.10005179986801677No Hit
GAGCAGGGCTCCTCAGTCTTTTGGCTGTATTTTGCCCATTGGCTGTTAATGC1410.10005179986801677No Hit
AGCATTGGGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCC1410.10005179986801677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)