FastQCFastQC Report
Sat 31 Dec 2022
SRR5844832.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844832.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193773
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT4460.2301662254287233No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC4350.22448947995850815No Hit
CTATCAGGGATGCATTGCTTGTGACTCAGCTGCCATGAGCTGGGAGAGTTTC2250.11611524825440077No Hit
AGGCCGGGTACTACTGTATGAATTTTACTATAAATATCTCATATGAGGAAAC2130.10992243501416607No Hit
AGCTGCGGGTGTGACTTGCTACCTATTGTGGCTACTCCATTAAAAGCAGAAA2100.10837423170410738No Hit
TTTCATGGGAAATACAAGGGAAAAATATGAATAATGAGTGATTTTTTCCATC2080.10734209616406827No Hit
TGCTCTGGGGAATGAAGTAGATCAGGAAATACTTACTTTGGTATGGTCACAA2080.10734209616406827No Hit
AGCCTCGGGAAACTCCAGATATATATTTCCAACTGCCTGTGCTGTCCGCCAT2070.10682602839404871No Hit
ACAAATGGGAGATGAAGGCATCCTTGGCATCCCTGCCCCCTCTGCATGTTGC2040.10527782508399004No Hit
CAACATGGGATTTATTTGATATTGAGGCAAAGCAAAGAATAACATATTCAGA2030.10476175731397047No Hit
ACGTCTGGGGGAGCGGGTTCCGGTTGTCTGGAGCCCAGCGGCGGGTGTGAGA2020.10424568954395091No Hit
AGCACTGGGATCTTCATCTGATGGCACTGAAAAGTTACCTGAGCGAGAAGAA2020.10424568954395091No Hit
CAACGTAGGGAAGCACTCTGTGTCAACCACCAGATTAGTATAACTATTAATT2020.10424568954395091No Hit
AAAGCAGGGTAACCGAATGTTCATTCATATTCATTTATAAAAAGTACCTGTA2020.10424568954395091No Hit
TCCGAAGGGGATGCCTCCAGTTTTGTTCTTTTTGCTTAGGATTGTCTTGGCT2010.10372962177393136No Hit
AAGTCAGGGATCCGGCGCCGGCTTTCGGCGCGACGGTCGCCGCGTTCCATCG2000.1032135540039118No Hit
ATTCACGGGAGGCGAGGCCAGCAGTGATGATGATCTCTTTCAGTCTGCTAAA1980.10218141846387269No Hit
TGCTTCGGGACACGAGGCTCAGCAGGCCATGGACATCCACTTCCACAGCCCG1980.10218141846387269No Hit
GGGTGAGGGCTTGGGAGTGGGCGGGCTCGAGGGCTGGGAGGAAGCCGAAAGC1980.10218141846387269No Hit
GTCATTGGGATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCA1970.10166535069385313No Hit
ATGAGGGCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTAT1970.10166535069385313No Hit
TGCACTGGGCTAAAGAGGAGGGAGAAAGTACTTATTTAGCAATATGACTTTT1960.10114928292383357No Hit
ACCTCTGGGCGCTCTTCCGATCTACACATGGGCAACTTGAGGAGTATTGATT1950.10063321515381402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)