FastQCFastQC Report
Sat 31 Dec 2022
SRR5844822.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844822.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151565
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT6240.4117045492033121No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC5920.390591495398014No Hit
CTTATAGGGACTCGTGTCTCGCTACCAGCTCCCCGCTGCCCTGCGCTCGGCG2260.14911094249991752No Hit
ATTGGTGGGTATTTGTTCACAGATAATATGATCTTATAGGTAGAAAATTCTG2200.14515224491142414No Hit
TGAAATGGGTCTGCACGGGATGACCCCAATACGCAAAACTAACCCCCTAATA2110.13921419852868405No Hit
AGGTATGGGGAGGCGACGCGCTGTCGGTGGCCGGCTGCGGCTCGTGCCTGGA2090.13789463266585292No Hit
TCAAGGCGGGATGTGAGAAACTGCCGAGTAGGTTCCTTCCTCAAAACTCTGA2090.13789463266585292No Hit
GTCGACGGGTGACTAGAAATCTAAAGGCTAATTCCAAAGAGAGGATTCATTG2070.1365750668030218No Hit
AGAGTGGGAGACTACTGTGCTATCTGCTTAAGATGGGAGTGGCCTGGGTCTC1990.1312968033516973No Hit
TATTTCGGGAAGACTTCAGTTTTTGACCTCCACAAAGACAGCAATTAGAGAT1980.13063702042028172No Hit
TCGTTTGGGAAAATGATGTGATCATGTGCCCTTCTCAGTGCATCGTATTTCA1980.13063702042028172No Hit
AAAATTGGGGTGAGAGTTTCCTGAGGTACCTCACCCTTCCACAAGACAACAG1930.1273381057632039No Hit
ATTTGGGGGAGTAGACCTTTAATGGAGACATGCATTTGCTAACTCATGGAAC1930.1273381057632039No Hit
AGCCTGGGTGACAGAGTGAGACTTTGTCTCGAGTAAAAAAAGAGAATGTAAA1910.12601853990037276No Hit
ATAGTTGGGATGGCTAAGTTGAGTTAATTAACATATTTATTGTCTCACATAC1900.12535875696895724No Hit
CGTACAGGGCCGATCTACAGTGGGGATTTCTTTAATGTTCTAAACAGCCGTA1890.12469897403754165No Hit
ATTATTGGGACATGAAAGTAGATAGCTTTCTCATATCTCACAACAAAAATAA1890.12469897403754165No Hit
ACTGGTGGGATCACAAAGCTATTGGTAATTAAAAAAAGAATTAGTATCAACT1890.12469897403754165No Hit
TGTCTGGGGAATCTTCAGCAACTTTGTGGCCCCAAGTGCCGTGACCTGAAAG1880.12403919110612609No Hit
GTAGGCGGGAGTGGGAGGACAGATTCCAAAGCAAAACTGGGTTGCTCCTTCC1870.12337940817471052No Hit
GCGTAAGGGCGTCTGTATAATCGGCTTCTGGAGTGAAACAGCAAACCCCAAA1860.12271962524329497No Hit
GCCAGGTCCTGTTGGAGCAGTTTGCTTCCGTCAGAGGGTCTTTGGATTCTCT1850.1220598423118794No Hit
CAACATGGGAGATTTAACCCAAAAGAAGATTACCTCAAGGCATTTAATATTC1850.1220598423118794No Hit
AAGTGAGGGATTCAAGGTTTTACATTCTATGATTGAAAAAAATTTTTTGAAA1840.12140005938046383No Hit
GACACTGGGATTTAACAAAGTGACATTGTGGAGTCATCAGTAAGAATGTGGC1830.12074027644904826No Hit
AAAACTGGGACTGCATTAGAAATGAGGTAGCTGACACAGAAAAAGGATGTTT1830.12074027644904826No Hit
CTCTCAGGGTCTGTAATAGAATTCCTATTCATCCTGAAATCATAGCAAATTA1810.11942071058621713No Hit
ACCGCTGGGATGGCTCTTGTTTATCAGCTAATCTTGAATTTATTCTGTGGTA1800.11876092765480156No Hit
ATGTCGAGGGAAGAATTTTTCAGACATGTCTATACTGAACAGTAGGATCCTG1800.11876092765480156No Hit
TGTAAGGGGCCCAATTGTAAATTTAATGTGATTTTGACTGTTTTATTCACCA1790.118101144723386No Hit
TTGTATGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1790.118101144723386No Hit
ATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAG1790.118101144723386No Hit
TCTACAGGGAAGTTGACACCTGATAACTTCTCCCTGATGGGTTTCCGAACTG1780.11744136179197044No Hit
CAGGCTGGGAACAAAAGTATGGCTTAACATTCCTAAAGCTTTGATTTGTTGC1780.11744136179197044No Hit
GCCTAGGGTAGGACGCAGCTGTTGCCATGACGGCCCAGGGGGGCCTGGTGGC1770.11678157886055487No Hit
TTAGGTAGGGATCAAGCAGACTTGGCAAACATTACTTGTGAAATTGCAATTA1760.11612179592913931No Hit
GTGCATGGGAGATACCAGAAATCTGGGAAGGCCATAATATAGCTGATTATAT1750.11546201299772374No Hit
CTAAAGGGGCTGCAGAGAGTATTTTGTCTCTCCCAACATTATTACAGAAGTT1750.11546201299772374No Hit
ATAGTGGGCTATTGTTTAAAGTGATTACATTTAACGTCCTCTCCCATGACTT1750.11546201299772374No Hit
TAACATGGGCATTCGTGTGTGTCTGCTTTTAAACTTGGCTGGGCTATCAGAC1720.11348266420347707No Hit
TAACGCGGGGACAGGCAGGGTGATAGTAACCTTGGAGGAGAAAAGATTTCAA1700.11216309834064593No Hit
TGTTGCAGGGGCTAGAATTTGTTTTAATTTTTTGTATTTTGAGCCACTTCAC1700.11216309834064593No Hit
CACTTGGGGAAGATAGCAATCAATCCTTTAAACATACTTGTAAACCTCAGTT1700.11216309834064593No Hit
TAAAAGGGATCCTATGACAAGAAAAAACAGTCTGAAGAGAGAAAGCAATTAG1690.11150331540923036No Hit
ACATACGGGGGGGATATTAGAAGACACCAAAATAGCATTGATACAATCAACA1690.11150331540923036No Hit
TTTTATGGGGAGTTGTAAATCAAGTAAAATTATTGTGACTGTGTGTATATGC1680.1108435324778148No Hit
GTATTGGGGGGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAACGCCA1680.1108435324778148No Hit
AGAAGGGGGATGAGGCCTGAATACCGCAGCAAAATAGATGCCAAATACAAAA1680.1108435324778148No Hit
TTATATGGGATACTTAATCATATGAAAGTTGGTGAAACTTGGATTACAGATT1670.11018374954639923No Hit
TGACAAGGGAGTGCAGGTCCTCACTTTAATCCTCTATCCAGAAAACACGGTG1670.11018374954639923No Hit
CACTCGGGCTACCAGAAGCTATTTCATTTATTCAGAATAATAAGGAACTTGG1660.10952396661498368No Hit
TACTACCGGGGCAATTTAAGGAGCAAAATAAGTGAGAATACATAAAACTAGA1660.10952396661498368No Hit
GAGCTTGGGCCTGGGGCTCAGATAATGTGTTTCTCTAGAAAAGCATGCATAA1660.10952396661498368No Hit
TAAGCAGGGGATGGCGCGATAAGTGTAGCAGAGATGAGGTAAAAGACGGTGA1660.10952396661498368No Hit
CTATATGGGAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAA1650.10886418368356811No Hit
GAATTGGGGAGACAAGGAACTGACTTGCGAATTCTGAGTTGCTTTCAGACTC1650.10886418368356811No Hit
GTGTCAGGGGCCTGACCAATATGATGAAACCCCACCTCTGCTAAAAATACAA1650.10886418368356811No Hit
AGCAGAGGGGATATCTCAGCCGAGAGGATGTTATGAGAAACACAGATTTGGG1650.10886418368356811No Hit
AAGCATGGGGAACATAATTTGTTAAATTCTCAAGCAAGGTTTTCACTTTTAT1650.10886418368356811No Hit
AACTACGGGAGTGGAATGCAATCCACTCCCTGCTTTTATCTATACCAGGTTA1640.10820440075215254No Hit
AGTTCTGGGATGGGATGCTGTGTCACAGGGAAATTTATTATAGCCACATACA1640.10820440075215254No Hit
GCTTTTGGGCCAGGGTAGCATCACGCCCACAGACTACACCCTCTCCAAGTGC1640.10820440075215254No Hit
TCTAAAGGGAGGAAATAAGTTAAACAATGCTGCAAACAAATTTGGTAACCCT1630.10754461782073697No Hit
GATACAGGGAACCTGGGTTGACTAGATGTTCTTTTTTGCATTTTTCTAGAAG1630.10754461782073697No Hit
TGTGGGGGTGCAAACATGAAGCAAATAATCACACAAATGTCTAAAGAATTAA1630.10754461782073697No Hit
AAACATGGGAAATGAAAGCTACCAATTTAAAGTTACGGAATCTACCATTTTA1630.10754461782073697No Hit
ATCGCTGGGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAA1630.10754461782073697No Hit
CTAACTGGGCGATCTAAAGCAGGGATTGGATTTGGATATTTGAGGTAAAATT1620.1068848348893214No Hit
CAAGTTGGGCTTGGTAAAGAAGATTAAGTTTAATGGGACAACTGGTCTCTTT1620.1068848348893214No Hit
TGATAGAGGGATACTATCTAGTGAATCCTGATTTATGATAGGCCACACTATA1610.10622505195790584No Hit
TAGTAAGGGGAGATACAAGCAGTAGTTGTAGTTATGTTAGGAATAGAGCTGG1610.10622505195790584No Hit
TGTAATGGGAGCTTAACAAAAAATATAGAAAGAGAAAAAGGGAATTTTAAAA1610.10622505195790584No Hit
GTTAAGGGGAGAAAGAGAGAGAAGGAAAGGAGAGAAGGCAGGAAGAAGGCAA1610.10622505195790584No Hit
CTTTGATGGGGCCGATCTAATTCAGGGTGGACCAGACAACTGCCGGCTGGTC1610.10622505195790584No Hit
TTGGGTGGGGGTCCCGCCCCCAGCGTGGTCGTAACCCAAGGCAACGGCCCAT1600.10556526902649027No Hit
GCCAATGGGCACGACGCTCTTTCGATCTGTCCTCGGGCAGCTTCAGTGACCC1600.10556526902649027No Hit
ATAGCTGGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACAC1600.10556526902649027No Hit
TTCAACGGGGACGCTCTTCTGATCTAACAAGGGGGGTGACAGGAAGCCCAAA1600.10556526902649027No Hit
TATCATGGGCAATGGCCCCTAAATATTCAAGTCAAAAGACGGGTCACAGGTC1600.10556526902649027No Hit
GATGCCGGGGTGCAGCAGAACAACACAGAGTCCTTTGCTGTCGCACTCTGCC1590.10490548609507472No Hit
CATCGCGGGGTTGGAGGAAGCAGCGGCAGCGGCGAGGGCGGCAGGCTAGCTG1590.10490548609507472No Hit
TGAGAAGGGTCTCATATCTGAGTCTTTCTGGAGTGTATTTGGTGTCTGTGTG1580.10424570316365915No Hit
GTATCGGGGAGGGAAGTCACCTCAAGATTGGTGACAGATCTTCTCATGTGAT1580.10424570316365915No Hit
TTCCTAGGGATCCTCCACATGGGAGGTAAATTGTTGAAACCTTGCATGACTG1580.10424570316365915No Hit
GCTCTGGGCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCT1570.1035859202322436No Hit
GCATAGGGGGAAATGGTACCCCTTGTTCAAAATGAACAAGAAGCCTTAGATT1570.1035859202322436No Hit
ACTTATGGGACTCAGGCTTTAACTAATTATGGAAGTGGAGAAGATGAAAATG1570.1035859202322436No Hit
CATTTTGGGTGCCATGAATTCATGGCGTGGATTCACAATTCTGTCGAATTGC1570.1035859202322436No Hit
TTTATAGGGCTCCCAAAGGAAAACCAATTATTTTGACTTTATTGTGCTATCA1570.1035859202322436No Hit
AAAGCCAGCGCTCCCGCCCGCTCCCCGACTTAGGATCCGATGCCGGCAGCGT1570.1035859202322436No Hit
TAGATTGGGGATATCAGCTTGAGTAATTAACTCATGATTATGCAAAGAAAAT1570.1035859202322436No Hit
CTCGCAGGGAGGAGATGATCGTGATTCATGCAGTGGGCTCCATGTAATCACA1560.10292613730082803No Hit
TATCGTGGGATTACACTTATGCTGGTATATAGATATAATTGCGTACTGGGAC1560.10292613730082803No Hit
GTAATAGGGCAGGATGATAAAAAAGAAGTCCATCCCCAAGACACATAATCAT1560.10292613730082803No Hit
CGCCAAGGGTCTGTTGGCGGGCAGCAAAGAAATTTATTTTGAGAATATGAAT1560.10292613730082803No Hit
CGCGCAGGGCGAAGCGTGGGAGGCACCCCCATTGCTCTCCTCCAGGGGCAGA1550.10226635436941248No Hit
GATCCGGGGATCCGGGGACCTGCAGGTTACAAGCAGCAGATCCCACCTTCAG1550.10226635436941248No Hit
AAGCATGGGATTGGTTTTTGGAAGCACTACTAATTTTTAAATGATGTGGTAA1550.10226635436941248No Hit
ATAGGTGGGAGGGGCGGTCTGCAGTGTGTGGAGATGAGAATGTCAGTCTGTT1550.10226635436941248No Hit
AACACAGGGATGTCAGGTAGGGTTCAGGGACTGATTGGTCCCATTTGCCCTC1540.10160657143799691No Hit
AGGGTGGGGAAGGGAATTTCTTCAAAAGGTATAAGTTAGTTTGCAAATAATA1540.10160657143799691No Hit
GCAAACGGGACTGGCTTTCTTTTTTCCTGTTTTCTTATGCTTCCAAAATCTT1540.10160657143799691No Hit
GCTTCGGGCTATGGAATTATTTTCAAACATTGTTCCTCGGACTGCTGAGAAC1540.10160657143799691No Hit
GCCTTAGGGGGCAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCG1530.10094678850658134No Hit
GGGTGGGGAAGGTCAGGGTAGAAGGAAACATGTTTTCCCCAGCTCCCAGGAG1530.10094678850658134No Hit
TTACTGGGAGGTATATACAACTGTGTTATATATGCAGGTGGATACTCACGTG1530.10094678850658134No Hit
TAGGATGGGATTGGAGCATATCAAAAAGTATTAAAACTAAAAAGGACCAGAG1530.10094678850658134No Hit
CACACGGGAGGTGGTTGTACAATAAGAAGGGGGTTGCAGACATGGAGAAACA1530.10094678850658134No Hit
TAGAGTGGGGGAGAGTCGGACTAAATGTGCGCCTTAAGTAACTGAGAATCTC1530.10094678850658134No Hit
TTATACGGAAATTATGAGAGGGACAAAAAGCATATATTTTGGGACTTTTGGT1520.10028700557516577No Hit
ATATACGGGAGAAAAAAAATCCTTTGCTTGCCAAGAGGTAGAGTGATGTGCA1520.10028700557516577No Hit
ATGACTGGGATGCTGGGATCTCAGGGACTGAGGGAGGTGTGACACAAGTAAT1520.10028700557516577No Hit
TCAAGAGGGAACCTGCCAGAAGCTGATTTGGCCTGAAGCCAGGGAGTTTATG1520.10028700557516577No Hit
TAGCGCGGGATCTTTGTTTGAAACATCGCAGGATAATGATACTTATTGAAAT1520.10028700557516577No Hit
TCAGTAGGGGAACAGTAATAAGCCGTCCTGCACCTGTCCTTGGCTCCAAGGC1520.10028700557516577No Hit
CACACACAAACTGAGAAAAGATTTGTATCAAACAGAATCAGAGGCATATGAA1520.10028700557516577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)