FastQCFastQC Report
Sat 31 Dec 2022
SRR5844801.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844801.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences291141
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT8210.2819939479496189No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC7950.2730635671375725No Hit
CGAAGTGGGAAGAGTATATTTTCCTTACAAATGAAGCCAAGGAAGTAGTGCA3640.12502533136864957No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG3460.11884276003723282No Hit
AAAGACGGGAAGCATTAGGACTGATACAAATAATATATGCTCCTGGCATAGA3090.10613414118932063No Hit
TTCTGCGGGGACAGCGAGCGGAGCCGCGGTCCGGACGGCAGCGCGTGCCCCG3030.10407328407884839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)