FastQCFastQC Report
Sat 31 Dec 2022
SRR5844800.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844800.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences285802
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC7390.25857061882002225No Hit
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT7320.25612137073918306No Hit
CGAAGTGGGAAGAGTATATTTTCCTTACAAATGAAGCCAAGGAAGTAGTGCA3900.13645810736104017No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG3550.12421186695684425No Hit
TGTTGAGGGCTTGTAACTTCCAGTCTGACATTATTGCTATAACAAACACATT2960.10356820456119971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)