FastQCFastQC Report
Sat 31 Dec 2022
SRR5844799.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844799.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93352
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC4510.48311766218184937No Hit
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT3980.4263433027680178No Hit
ACATGCGGGAAATAGTCAGTGGGCCGAAGAGGAAATCAAAAGAGAAATAAGA1970.21102922272688318No Hit
CTTGCGGGCTTTGGAAATGAGTGCACAAATCCAATGAAGCAAAAAGAGCCTT1400.14997000599880025No Hit
TATTCTGGGGACGCTCTTCCGATCTTGCAAGCTGGCCATCCGTGAATCCATC1380.1478275773416745No Hit
CGAAACGGGTTCCACACAGCCCTTGGTCTTAGGCGAGATGATACATTTTCTG1380.1478275773416745No Hit
CTGCAAACGGGCGAAGCTTAAGGGAAATTACAAAGGAAAAGATTGATAGGTT1380.1478275773416745No Hit
AAGTTGGGATGCTTTTCCTATGTTGTAAATTTACAGCAAAAATAAAGAAGGC1330.14247150569886022No Hit
GTTGCAGGAGGATTCTGGATGTATACAGATGCTCTTCATCTTAGGAAGGGGT1330.14247150569886022No Hit
TTCATTGGGAAGGGAGAGTGGTATTTGCAGACTAGAATTCTAGTGCTGCTGA1310.1403290770417345No Hit
CACATAGGGAACGTGCTCCACAACACTCAGACTCTCCTAGAACACACAGAAT1300.13925786271317164No Hit
GTACGAGGGTTCATAATTTGCACCAAGTACAGAATAGGATAATGTAGCTTTA1290.1381866483846088No Hit
TTTTCCGGGTGGCCAGTTAACCACTGGGAGAGCATCCGGACAGACGTTTCGC1280.13711543405604593No Hit
CATCTTGGGAGCCTTTTCAACGAATAGTATTGGGACTACTGGATATCCACAT1280.13711543405604593No Hit
CCCCCAGCCTCAGAGTCCCCTCGTTTCTCCTTGGAGGCGCTGACGGGTCCAG1280.13711543405604593No Hit
CTATGAGGGATCAGGAAATGAGGCCAGAACTTGAGTATTTACTAACACGTTT1270.13604421972748307No Hit
CGTCTTGGGACCTCAGATTCTTCATTGAGGATTGGTATAGCCATGATTTCAG1270.13604421972748307No Hit
GGGCACGGGCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTT1260.1349730053989202No Hit
TGCTCAGGGAGACACGGCCCGAGCGCCGCCGCGGACGCGGACAGAGACCCGC1260.1349730053989202No Hit
TCATCGGGCCACAAGCCAAAGGATGGACTGGGGTTACCTGAAGCTGGAAGAG1260.1349730053989202No Hit
CCTCAAGGGACATTTTCATTGCCTGAAAAATTAGCCAACGCTTGGGGGGAAA1260.1349730053989202No Hit
AGAAATGGGAGCCGAGCTGATGGCGCACCCCGGCTACCCCAGTGTGCCTCCC1250.13390179107035735No Hit
GCCCTGGGGTAAAAATTCAAAACAATTGAAATTATATCAAGTATCATCTTTG1250.13390179107035735No Hit
TTACACCGGGGGGACAAAAGTATAAATATTATTTATTTCAGGTAGAATTTTT1230.13175936241323163No Hit
CCAACTGGGGAGATATTGGCATTCTGTATTATAGCTGAATTATATTGGATTT1230.13175936241323163No Hit
TTTGTAGGGATTACATTCTGACAGGGTGTGTGGCATTGTGTTCTATGCCAGA1230.13175936241323163No Hit
TAATTAGGGCGATCTAAACTGGGGCATAACCACACCAATAACGAAATAGAAG1230.13175936241323163No Hit
ATGAACGGGACATTTCTAAGACATTAAATCCCATTTAAATTCTGTGTGAACA1220.13068814808466878No Hit
ATCAGGGAACCTTTTCCTCAAAAAGAACCAAGAAGGGAAACAAGTCCACTTG1210.12961693375610592No Hit
TTTCTGGGATTATGGGGAAAGTGATGCCAGCAGTTCCTTTTCATTATTCTAT1210.12961693375610592No Hit
TGATGTGGGCATGAAGAGTAGTCTTTCTATGAATAAATGAGAAGATGCACAC1200.12854571942754306No Hit
CATCCCGGGCGACGGCGCCGCTCGCAGGTCGGGTCCGGCTTCCGCCCAGACT1200.12854571942754306No Hit
TGAGCGGGAGAATATTGGAGCTATGTCATCTTATCTTTTAATTATTAAAACA1200.12854571942754306No Hit
AGCCTCGGGGATGCTGATGCATTTTGATGCTTTGTGCATTCATTTCTTTCTG1200.12854571942754306No Hit
CTACGTGGGTTAGAAATGATTTTTTGATTTCTCTTTTCTCCAAATCCCTTGA1190.1274745050989802No Hit
ACCAATGGGACATCTTTTTATAAATCTTTTTTCTTCCAGTTTTTTTCTTAGA1180.12640329077041734No Hit
GTGCCGGGGATTTCTCATTTAGCATTGAAATAATAATATTTAGGCATGAGCT1170.12533207644185448No Hit
TGTAACGGGGATTTTTGACTCTACATTCTTTATCTACCATACTGCTCTTTTC1160.12426086211329163No Hit
TTTTAAGGGCGGCATTCAGGTGTCTTGTAATTCCATAAAATTTTGGAGTTAG1150.12318964778472877No Hit
TTTACGTGGGGTGCTTTCTTCCTTTGCATGATTTACACCTCCGCCTGTTTTG1150.12318964778472877No Hit
GTATACGGGCTCTCTCTCTTTCACTGCAAGGCGGCGGCAGGAGAGGTTGTGG1150.12318964778472877No Hit
TACCCCATGCTTAGAAATTAAATTGGTCCCCAGGCACACCCTTTCATGCCTC1140.12211843345616591No Hit
TCTTCAGGGTCTCACAGTGGGGTGATGGGGGTCCGAAGAGCCAGAAGGCTTA1130.12104721912760306No Hit
GCTGCAGGGGCGTACAGAAACACTCTTATGGTGTATGTATGCGTCTATTTGG1120.11997600479904018No Hit
TGCTAGGGGGATCTACTTATTTACTTCCTTTCTCTTCTCAAAGATAATACAT1120.11997600479904018No Hit
AGTTCTGGGTGAAACTACTGCCACCTGCTCACTGCGAAACCCTCCGGTACCT1120.11997600479904018No Hit
TCTCTTGGGTACTTACTGCCTAAAAACTACAAAACCAGGCTAAGAAATACCA1120.11997600479904018No Hit
GTGCATGGGAAGGACAGACACAACGGCAACATTATGCTGGACAAGAAGGGTC1120.11997600479904018No Hit
CGTCAAGGGGGGACCACACCCTGAAGGAGGTCGCTTTCTACAACCGCCTGTT1120.11997600479904018No Hit
ATCGCTGGGTTACTCTAAAATCTACAATAATCAAGACTGTGAAACTGGTGAA1120.11997600479904018No Hit
ACTACGGGGAAAGTTAGTGTGTGTTATGTTTAAGGGAAAGGACAATGATTTC1110.11890479047047733No Hit
ATGCCGGGGCCAGTTTCTTCTCTTCAGTGCTCAAGTCACACATCTTATGAAA1110.11890479047047733No Hit
TCAAGGCGGGATAGGTATGTTGTGTGTTCTGTGTTCTTGCAGCCTATACGAT1110.11890479047047733No Hit
ATGGCTGGGGTAACATCAGTCCTAACACCTAAACCAAGTTTTGGGTAAGGGG1110.11890479047047733No Hit
GCTTGCGGGATGAGCAGAGGGAGCGCTTCTTGCTCTTCTGCGTCCACGGAGA1100.11783357614191448No Hit
GGTAATGGGATTCTTGGGAGTTCTAGGGCCACACTCACCACCTGTTCCTCCC1100.11783357614191448No Hit
TATTGAGGGATTGTCAGAAATTTTACAAGCCAAAACACAATAATGATGTCTT1100.11783357614191448No Hit
ATGCGGGGTCACCGCAGGATTTCCGGTAGGTTGGATTGTGGGGTTGGTGTTT1100.11783357614191448No Hit
CAATTAGGGAACCATTTCTGGGTTTCTGCCTAACCCCCTAATTGTCTGTTAA1100.11783357614191448No Hit
TATGCTGGGACCAACCCACTGCCCATGGCATGTCTTTGGGAGGTGTCTGTGA1090.11676236181335162No Hit
ACTTAAGGGAAGAAATAAAAGCATTATTGGGTGCCTTTGTTTGTAAACCAAA1090.11676236181335162No Hit
ACACATGGGATCTTCACCTCAAACCCTGTGAGGCAGGCATTGTTATCCTCTC1080.11569114748478876No Hit
ACCAGTGGGCTAGTCAGTGCCTTATCTCCTTCTGTCAAAGTTCGAGTCACTG1080.11569114748478876No Hit
CTGCATGGGACATCTCAATCATTTGTTCACATCGAATGAGAGAAAATAAAAA1070.1146199331562259No Hit
TAGCAAGGGCACTTTGGGGAGTACAATGCTTATTCTCAAAATGCTCACAACA1070.1146199331562259No Hit
ATACTAGGGACTTAACCTCCGTGATGGGGAAAGCGGCCGGAGAAAGGGAGTT1070.1146199331562259No Hit
AATTTTGGGGTGAGGAACTGCTGGTCTTGGATTTTTTTTCCATTAAATTCAG1070.1146199331562259No Hit
ATCGGCGGGAAGACAGATTTTGTCAAACAAGCTGGTATCATGAGGAAGTCAG1060.11354871882766303No Hit
ATAGACGGGAAGAATTATGATTTTAATATATTCTTATTAAAGGATGTATTGC1060.11354871882766303No Hit
GCTAAAGGGAGGGATTGGGTTTAACATACGACTTTTGAGGGAACACATCTTC1060.11354871882766303No Hit
AATATAGGGATGTCTACCCCAGTTGGAAGTATCTCTGCAATGACTGGAAAGT1050.11247750449910017No Hit
TCCGATGGGATATACTTGGATCTACATAAAGAAAGATGGAGCCCAAGAAAAG1050.11247750449910017No Hit
ACAGCGAGGGAGATCAAAAATGGCGGTAGTTGGTGTGTCCTCGGTTTCTCGG1050.11247750449910017No Hit
TTTTGTGGGAGAGGATTCAGACTCAGAAGTAAGTGAATTTTTTGATAGTTTT1050.11247750449910017No Hit
TAGGTTGGGATCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGT1050.11247750449910017No Hit
ATGTTTGGGACTAAAAAAGATGTACACAAAGTATCTTACAGAAAAAGGAAAA1050.11247750449910017No Hit
GCATATGGGGAGTCGTGGACTCGTGCAGCTGGGGCGTCCGCAGCCGCTCGTC1040.11140629017053733No Hit
CTGTTTGGGATGTTCATGGGCGTTTACACAGTGGAGTTACTGTTCATCATGG1040.11140629017053733No Hit
GGCTATGGGCTTCCTGTAGCCTAGCTACTGGCTTCTGCCCTTACTGAGGGCA1040.11140629017053733No Hit
ATATTTGGGCTACATCAAAAAACAAGAAACATTTCAAATAAATAACAATGCA1040.11140629017053733No Hit
TCGCGTGGGACCTGCTTCAGCTTTGTGCATTTCAGGTCTCAAGTGGACATTC1030.11033507584197447No Hit
ATTAGCGGGAGAAAGAGCATTTGAAGAGCAAAAGGCAAAGGTTCCATCACCA1030.11033507584197447No Hit
TCAGTGGGGATTGGATACAAAGGCTAAGGTGACGTGGGTAACTGAAATTCCA1030.11033507584197447No Hit
TGAGCATGGGAGGACTAAGACGTAGTGGACAAATTGAAGGTGTACGGCAAAT1030.11033507584197447No Hit
ACCAGGGGGGAAAATATACATCTAGAATTGAAGAAATATAGTAATCAATGTA1020.10926386151341161No Hit
TTCGCAGGGATATGATATCAAACAAAATAGACTTTAAGTCAAAACTTGTTAC1020.10926386151341161No Hit
TCAGTTGGGATTTTACAGGTGAGCAAACTGAGTCTTAAATGGGCTCCACAGC1010.10819264718484874No Hit
TATGTCGGGCATTTATAGCACTTATCACATTCTGTCTTTGAATTTTGTATTA1010.10819264718484874No Hit
TGACTGGGGACCTCGCTTTAAACGACTCGCGGACATGTATGGGACTGGCCAA1010.10819264718484874No Hit
CAAGCGGGGGGCTATATAAAATAATGGCTTCCTGGATAACTGTGTATGTATT1000.10712143285628588No Hit
ATGTGAGGGCGCTCTTCCGATCTGGGCACGGGGAGGCATTGAGGCAGCCAGC1000.10712143285628588No Hit
TTCTGGGGGATCACTTAAAAGTTGGACCAGAAAAGTATAGAAAGAGCATAAT1000.10712143285628588No Hit
AGCTGCTGGTGGATGTGGTGACGGGGCAGCTTGGGGACGAAGGGGAGCAGTG990.10605021852772302No Hit
TCGCCAGGGATCGACGTGCAGGTGGGGCTCCTGTACGAAGAGGGTGTTCGCA990.10605021852772302No Hit
TTTAAAGGGGTGGTGACTGATGTTCTTAGATAGAAGAGAGAGAAAAGGCAAA980.10497900419916018No Hit
CGTGAGGGATTGAATTAAGACTGGAAAAGCTTAAGCACTGTGCACAGTGACC980.10497900419916018No Hit
GAAAATGGGAGACTTCAGAGAGAGAGCAGGTTTGTAAAATGTTTCTCATCAG980.10497900419916018No Hit
TCGCCAGGGCTTGTATTTTGTAGTAATAGGCTTAAGGTCTGAAAATTGTTCA980.10497900419916018No Hit
TCCGTTGGGCAGTGCCTGCCACCATGCTTGGCTAATTTGTTTTATTTTTATT980.10497900419916018No Hit
TTATGGGGGGCTACTGAGTACCCTGAAATGTCACGAAGTTGATGCAATGAAA980.10497900419916018No Hit
GGCCTGGGATTTCTTGGTGTAGTGAAGCTCTTACGAGACAGTCTTTGCTAAT980.10497900419916018No Hit
GAGCAGGGGACGATGAAATATACCATAATTATTTCATTATAGCCTCTGCAAA980.10497900419916018No Hit
GTAGGGGGGTTGTGGATATTTATGATTAGATATATGTAAAATACTTTTGCAA970.10390778987059732No Hit
CTTGTATGGGATCCCCCATTCGAACTTAACAGATGCCTCCTCTCCAAAGAGA970.10390778987059732No Hit
GTATATGGGATTTCATTTAACACAGGAACTGAGACTTTTGAAGGAAGAAATC970.10390778987059732No Hit
ATTTTGGGGCCTATTGCCCAAGTATTGTCAAACTATGGTATTATTTTAATGT970.10390778987059732No Hit
TGTCTTGGGATGAAGTTCAAGGCAAAATAGTATTTTCTATTACTGTGCAGGG950.10176536121347159No Hit
CTCTTAGGGAATGAATTCTCTTAAAAACATACTGTATTCTGTTGCTGTGTGT950.10176536121347159No Hit
AACCCTGGGACGGTTTGAGCCACCTGAATTTAAACAGTCTGTGATTGATTTA950.10176536121347159No Hit
CTTACTGGGCAAGGTACAATCCTAAAAAATATATGTGTTATGTGCAGATGTT950.10176536121347159No Hit
TGAACGCGGGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACC950.10176536121347159No Hit
AAGGGGGAGACCTAAAAAATGAGATAGCAACATAACAATAGTGGAAGATTTT950.10176536121347159No Hit
TCACTCTGGGCAAACATGCTCAGAACACTTACCTCAGCCTACAGTTGGGCAA950.10176536121347159No Hit
AAGTGCGGGATATGGCTCATTGACTTTTCCATTACATCTGAGGATTCCAGAG950.10176536121347159No Hit
CTCAGGGGTTTCAACTTGTAGGAGTGTTTGTAAATATTTATAAAATTTTATG940.10069414688490873No Hit
ACTCTTGGGAAAAGAAATAACTGTTGATACCTATGAATATATAATATAAAAA940.10069414688490873No Hit
CATACAGGGACTGTCTTCCCTTGGTCAGTGTTGTCTGTGTCCTCGTCTCCTC940.10069414688490873No Hit
GTTATTGGGAATCTAGCTGGAGCTGTTGAATTCAATGATGTGAAGACCTTGC940.10069414688490873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)