FastQCFastQC Report
Sat 31 Dec 2022
SRR5844798.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844798.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93667
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT4500.48042533656463854No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC4310.4601407112430205No Hit
ACATGCGGGAAATAGTCAGTGGGCCGAAGAGGAAATCAAAAGAGAAATAAGA1840.19644058206198553No Hit
TATTCTGGGGACGCTCTTCCGATCTTGCAAGCTGGCCATCCGTGAATCCATC1730.18469685161262772No Hit
CTGCAAACGGGCGAAGCTTAAGGGAAATTACAAAGGAAAAGATTGATAGGTT1360.1451952128284241No Hit
GTATACGGGCTCTCTCTCTTTCACTGCAAGGCGGCGGCAGGAGAGGTTGTGG1360.1451952128284241No Hit
CTTGCGGGCTTTGGAAATGAGTGCACAAATCCAATGAAGCAAAAAGAGCCTT1350.14412760096939156No Hit
TTTTCCGGGTGGCCAGTTAACCACTGGGAGAGCATCCGGACAGACGTTTCGC1340.14305998911035903No Hit
ATGCGGGGTCACCGCAGGATTTCCGGTAGGTTGGATTGTGGGGTTGGTGTTT1340.14305998911035903No Hit
CACATAGGGAACGTGCTCCACAACACTCAGACTCTCCTAGAACACACAGAAT1330.14199237725132652No Hit
CGTCTTGGGACCTCAGATTCTTCATTGAGGATTGGTATAGCCATGATTTCAG1320.14092476539229398No Hit
CATCCCGGGCGACGGCGCCGCTCGCAGGTCGGGTCCGGCTTCCGCCCAGACT1320.14092476539229398No Hit
GTTGCAGGAGGATTCTGGATGTATACAGATGCTCTTCATCTTAGGAAGGGGT1310.13985715353326145No Hit
AGAAATGGGAGCCGAGCTGATGGCGCACCCCGGCTACCCCAGTGTGCCTCCC1310.13985715353326145No Hit
TTACACCGGGGGGACAAAAGTATAAATATTATTTATTTCAGGTAGAATTTTT1300.1387895416742289No Hit
GCATATGGGGAGTCGTGGACTCGTGCAGCTGGGGCGTCCGCAGCCGCTCGTC1290.13772192981519638No Hit
TGCTCAGGGAGACACGGCCCGAGCGCCGCCGCGGACGCGGACAGAGACCCGC1290.13772192981519638No Hit
ATCAGGGAACCTTTTCCTCAAAAAGAACCAAGAAGGGAAACAAGTCCACTTG1290.13772192981519638No Hit
TTTGTAGGGATTACATTCTGACAGGGTGTGTGGCATTGTGTTCTATGCCAGA1280.13665431795616387No Hit
TGGACGGGACACCAAGAAGTGGGCAAAGAGCAACAAAAGTGTTAGGAGCGGA1280.13665431795616387No Hit
AATATAGGGATGTCTACCCCAGTTGGAAGTATCTCTGCAATGACTGGAAAGT1260.1345190942380988No Hit
TTCGCAGGGATATGATATCAAACAAAATAGACTTTAAGTCAAAACTTGTTAC1250.13345148237906626No Hit
TCATCGGGCCACAAGCCAAAGGATGGACTGGGGTTACCTGAAGCTGGAAGAG1250.13345148237906626No Hit
TTTCTGGGATTATGGGGAAAGTGATGCCAGCAGTTCCTTTTCATTATTCTAT1240.13238387052003373No Hit
TGAGCGGGAGAATATTGGAGCTATGTCATCTTATCTTTTAATTATTAAAACA1240.13238387052003373No Hit
TGTCTTGGGATGAAGTTCAAGGCAAAATAGTATTTTCTATTACTGTGCAGGG1210.12918103494293615No Hit
CTATGAGGGATCAGGAAATGAGGCCAGAACTTGAGTATTTACTAACACGTTT1210.12918103494293615No Hit
TTTTAAGGGCGGCATTCAGGTGTCTTGTAATTCCATAAAATTTTGGAGTTAG1200.1281134230839036No Hit
CGAAACGGGTTCCACACAGCCCTTGGTCTTAGGCGAGATGATACATTTTCTG1200.1281134230839036No Hit
CATTTGGGGAAGCAACTGGATGATAGAGAAAGAAGCAGAAGTGGAAGAGGAA1200.1281134230839036No Hit
AGCGGCTGGGTGTGCCACCAATGAGAGCATTGGGTTCAAGTTTGCATCAAAC1190.1270458112248711No Hit
TTCTGGGGGATCACTTAAAAGTTGGACCAGAAAAGTATAGAAAGAGCATAAT1190.1270458112248711No Hit
CATACAGGGACTGTCTTCCCTTGGTCAGTGTTGTCTGTGTCCTCGTCTCCTC1180.12597819936583857No Hit
TAATTAGGGCGATCTAAACTGGGGCATAACCACACCAATAACGAAATAGAAG1180.12597819936583857No Hit
ATGTTTGGGACTAAAAAAGATGTACACAAAGTATCTTACAGAAAAAGGAAAA1180.12597819936583857No Hit
GCTAAAGGGAGGGATTGGGTTTAACATACGACTTTTGAGGGAACACATCTTC1170.12491058750680603No Hit
ATCTTGGGGCCTAATCACCAGTACAAGTAGAAAAGATTGCTGTTTGTTTATT1170.12491058750680603No Hit
ATTAGCGGGAGAAAGAGCATTTGAAGAGCAAAAGGCAAAGGTTCCATCACCA1160.1238429756477735No Hit
ATGGCTGGGGTAACATCAGTCCTAACACCTAAACCAAGTTTTGGGTAAGGGG1160.1238429756477735No Hit
TCTTCAGGGTCTCACAGTGGGGTGATGGGGGTCCGAAGAGCCAGAAGGCTTA1160.1238429756477735No Hit
GGGCACGGGCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTT1150.12277536378874096No Hit
GTACGAGGGTTCATAATTTGCACCAAGTACAGAATAGGATAATGTAGCTTTA1150.12277536378874096No Hit
GCCCTGGGGTAAAAATTCAAAACAATTGAAATTATATCAAGTATCATCTTTG1150.12277536378874096No Hit
CTACGTGGGTTAGAAATGATTTTTTGATTTCTCTTTTCTCCAAATCCCTTGA1140.12170775192970842No Hit
TACCCCATGCTTAGAAATTAAATTGGTCCCCAGGCACACCCTTTCATGCCTC1140.12170775192970842No Hit
GTGCATGGGAAGGACAGACACAACGGCAACATTATGCTGGACAAGAAGGGTC1140.12170775192970842No Hit
GGCCTGGGATTTCTTGGTGTAGTGAAGCTCTTACGAGACAGTCTTTGCTAAT1140.12170775192970842No Hit
ATAGACGGGAAGAATTATGATTTTAATATATTCTTATTAAAGGATGTATTGC1130.1206401400706759No Hit
CCTCAAGGGACATTTTCATTGCCTGAAAAATTAGCCAACGCTTGGGGGGAAA1120.11957252821164337No Hit
TGTAACGGGAAGAGCAGGGATGCCTTTGTGGCACAGGAAGGAGCCATTTGTA1120.11957252821164337No Hit
ATCGGCGGGAAGACAGATTTTGTCAAACAAGCTGGTATCATGAGGAAGTCAG1110.11850491635261086No Hit
AGCTGCTGGTGGATGTGGTGACGGGGCAGCTTGGGGACGAAGGGGAGCAGTG1100.11743730449357832No Hit
TATGTCGGGCATTTATAGCACTTATCACATTCTGTCTTTGAATTTTGTATTA1100.11743730449357832No Hit
CTGCATGGGACATCTCAATCATTTGTTCACATCGAATGAGAGAAAATAAAAA1090.11636969263454579No Hit
TATGCTGGGACCAACCCACTGCCCATGGCATGTCTTTGGGAGGTGTCTGTGA1090.11636969263454579No Hit
AGTTCTGGGTGAAACTACTGCCACCTGCTCACTGCGAAACCCTCCGGTACCT1090.11636969263454579No Hit
CTTACTGGGCAAGGTACAATCCTAAAAAATATATGTGTTATGTGCAGATGTT1090.11636969263454579No Hit
TCAGTTGGGATTTTACAGGTGAGCAAACTGAGTCTTAAATGGGCTCCACAGC1080.11530208077551325No Hit
CCCCCAGCCTCAGAGTCCCCTCGTTTCTCCTTGGAGGCGCTGACGGGTCCAG1080.11530208077551325No Hit
GTATATGGGATTTCATTTAACACAGGAACTGAGACTTTTGAAGGAAGAAATC1080.11530208077551325No Hit
GCTGCAGGGGCGTACAGAAACACTCTTATGGTGTATGTATGCGTCTATTTGG1070.11423446891648073No Hit
ATGAACGGGACATTTCTAAGACATTAAATCCCATTTAAATTCTGTGTGAACA1070.11423446891648073No Hit
ACAGCGAGGGAGATCAAAAATGGCGGTAGTTGGTGTGTCCTCGGTTTCTCGG1070.11423446891648073No Hit
TGTAACGGGGATTTTTGACTCTACATTCTTTATCTACCATACTGCTCTTTTC1070.11423446891648073No Hit
CGTCAAGGGGGGACCACACCCTGAAGGAGGTCGCTTTCTACAACCGCCTGTT1070.11423446891648073No Hit
TCAAGGCGGGATAGGTATGTTGTGTGTTCTGTGTTCTTGCAGCCTATACGAT1070.11423446891648073No Hit
TGCTAGGGGGATCTACTTATTTACTTCCTTTCTCTTCTCAAAGATAATACAT1050.11209924519841566No Hit
TCCGATGGGATATACTTGGATCTACATAAAGAAAGATGGAGCCCAAGAAAAG1050.11209924519841566No Hit
GGTAATGGGATTCTTGGGAGTTCTAGGGCCACACTCACCACCTGTTCCTCCC1050.11209924519841566No Hit
AATAATGGGATCTCTTTTAGTCTTCTCTCTTTTTCAGAAATGTGAGTTCTTT1050.11209924519841566No Hit
GAAAATGGGAGACTTCAGAGAGAGAGCAGGTTTGTAAAATGTTTCTCATCAG1050.11209924519841566No Hit
AAGGGGGAGACCTAAAAAATGAGATAGCAACATAACAATAGTGGAAGATTTT1050.11209924519841566No Hit
TGAGCATGGGAGGACTAAGACGTAGTGGACAAATTGAAGGTGTACGGCAAAT1050.11209924519841566No Hit
CATACGGGAGAGTTGTAGAAAATCTCAGATGAGCTTTAAAAAATTTGCTTTT1040.11103163333938312No Hit
CGCTGGCGGGTTAGGTGGCTGCGTGGCCGCCTCACTTCGCGCACGCGCCGCT1040.11103163333938312No Hit
GTGAAGGGGGGCCACATGAGAATGCACAGCTGGAACTGGTCCTTGAGGTGGA1040.11103163333938312No Hit
GCGACAGGGGACCAGGGTTTGTTCTTGGTAGGGTTTTTCTTTTTCTTTTTTA1040.11103163333938312No Hit
GAATTAGGGCCTTGCCTTATGTCCCACATTCCCCAGGGGATTGTCAGCTCCC1040.11103163333938312No Hit
CAGCAAGGGAGTGAACTACAGATGACAAGAATAAAGACTTTTCAGAATATTT1030.1099640214803506No Hit
ATGCCGGGGCCAGTTTCTTCTCTTCAGTGCTCAAGTCACACATCTTATGAAA1030.1099640214803506No Hit
TCTCTTGGGTACTTACTGCCTAAAAACTACAAAACCAGGCTAAGAAATACCA1030.1099640214803506No Hit
TCAGTGGGGATTGGATACAAAGGCTAAGGTGACGTGGGTAACTGAAATTCCA1020.10889640962131807No Hit
ACTGTTGGGGGTATTTGTTGCAACTTACTACATAGCATATACCCAAAATCAC1020.10889640962131807No Hit
TTCATTGGGAAGGGAGAGTGGTATTTGCAGACTAGAATTCTAGTGCTGCTGA1020.10889640962131807No Hit
AGCCTCGGGGATGCTGATGCATTTTGATGCTTTGTGCATTCATTTCTTTCTG1020.10889640962131807No Hit
AAGCAGGGGGGGTTAGAGGGAAGAGAGGTATGGGGAGGAATAGTGGCCGCGG1010.10782879776228556No Hit
CATCTTGGGAGCCTTTTCAACGAATAGTATTGGGACTACTGGATATCCACAT1010.10782879776228556No Hit
CAAGCGGGGGGCTATATAAAATAATGGCTTCCTGGATAACTGTGTATGTATT1000.10676118590325302No Hit
ATACACGGGATGTATAGAAGAGTATTTTTTTAATCCCAAACTTAGGATATTT1000.10676118590325302No Hit
ACACATGGGATCTTCACCTCAAACCCTGTGAGGCAGGCATTGTTATCCTCTC1000.10676118590325302No Hit
CTCTGTGGGATGACGTGTATGTTTTACATGATGTGTGCCTCTTCACGCAGTA1000.10676118590325302No Hit
ACCAGGGGGGAAAATATACATCTAGAATTGAAGAAATATAGTAATCAATGTA1000.10676118590325302No Hit
GCTAAAGGGAGGAGTGACATTCTTAGTTTCATATTTCAGCAAGCCCCTCTGC1000.10676118590325302No Hit
GATCACGTGGGATGAAAGGAGAATTTCATCACTTTTACTGAAACTCTTACAA1000.10676118590325302No Hit
AAGAGAGGGGGCTCACCTGCAGCTCCCCGGATCTCGCCTGGGGACCAGCGGC1000.10676118590325302No Hit
TTTTGTGGGAGAGGATTCAGACTCAGAAGTAAGTGAATTTTTTGATAGTTTT1000.10676118590325302No Hit
ACTTAAGGGAAGAAATAAAAGCATTATTGGGTGCCTTTGTTTGTAAACCAAA1000.10676118590325302No Hit
TAGGTTGGGATCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGT1000.10676118590325302No Hit
GTTATTGGGAATCTAGCTGGAGCTGTTGAATTCAATGATGTGAAGACCTTGC1000.10676118590325302No Hit
GCTTGCGGGATGAGCAGAGGGAGCGCTTCTTGCTCTTCTGCGTCCACGGAGA990.10569357404422049No Hit
TTTAAAGGGGTGGTGACTGATGTTCTTAGATAGAAGAGAGAGAAAAGGCAAA990.10569357404422049No Hit
CAAATTGGGGTGGATTAGTGCTTATGATCTTGAAAAAGTCTTGACCAAGAAT990.10569357404422049No Hit
ACCAGTGGGCTAGTCAGTGCCTTATCTCCTTCTGTCAAAGTTCGAGTCACTG990.10569357404422049No Hit
CCAACTGGGGAGATATTGGCATTCTGTATTATAGCTGAATTATATTGGATTT990.10569357404422049No Hit
ACTCTTGGGAAAAGAAATAACTGTTGATACCTATGAATATATAATATAAAAA990.10569357404422049No Hit
TTTACGTGGGGTGCTTTCTTCCTTTGCATGATTTACACCTCCGCCTGTTTTG990.10569357404422049No Hit
TCCGTTGGGCAGTGCCTGCCACCATGCTTGGCTAATTTGTTTTATTTTTATT980.10462596218518795No Hit
ATATGTGGGATGTCTCAAATGTAGTTATAGATTTTATTAGTAGAAAGTTTGC980.10462596218518795No Hit
AAGTTTGGGCACAAATTGTGGTGTTGTTAGGTGACATTTAATATTTCTTGAG980.10462596218518795No Hit
GTCATTGGGAAGTAGAGACGGGGTCTCACCGTGTTGGCCAGGCTGGTCTCGA970.10355835032615543No Hit
TCACTCGGGAACTGCATGTGTGTCTGTAGGTCTCAGTTTCCACATTCATACA970.10355835032615543No Hit
TTATGAGGGGGAGGAGAACCCTGGCAATGATAATGTAACAATTATGGAGCTA970.10355835032615543No Hit
TAGCAAGGGCACTTTGGGGAGTACAATGCTTATTCTCAAAATGCTCACAACA970.10355835032615543No Hit
CTTAGAGGGAGATATTTGTGAACTAGTCAGTATTTTAAAAAGCATACATTCT970.10355835032615543No Hit
CTCTGCAGGGATAATGGGAGTGAACATTCTCTGTGAATTATCAGAGTCCCTG970.10355835032615543No Hit
AAGTTGGGATGCTTTTCCTATGTTGTAAATTTACAGCAAAAATAAAGAAGGC960.1024907384671229No Hit
AATCTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA960.1024907384671229No Hit
CTACGTAGGCATCATATTTCTAGTTGGATTTGTGTCTGTACTTTCAGGATTT960.1024907384671229No Hit
CTGTATGGGATCTTCATCAAGAGGGATCAACTGTGGAGAAGCTACTTCAGAA960.1024907384671229No Hit
GACAACGGGGGCTGTTCCCATCTTTTTCCCTCATCCCATGCTCTTACCTACC960.1024907384671229No Hit
ATCGCTGGGTTACTCTAAAATCTACAATAATCAAGACTGTGAAACTGGTGAA960.1024907384671229No Hit
CATGAAGGGAGGAAAGAACCTTCAAAAAAACCAGTGAATCCAGGAGCTGGTT950.10142312660809036No Hit
TTAGCTGGGATCTTATTCCTTCCACTGTTCAGAAGTCTAATATGGGAAGCCA950.10142312660809036No Hit
ACATGCGGGCTCATAGAAAATCAAATGTTTTTATTTGTTAAAAGTAGACTGA950.10142312660809036No Hit
TCGCCAGGGATCGACGTGCAGGTGGGGCTCCTGTACGAAGAGGGTGTTCGCA950.10142312660809036No Hit
AACCCTGGGACGGTTTGAGCCACCTGAATTTAAACAGTCTGTGATTGATTTA950.10142312660809036No Hit
CGTCAGGGGGGGTGGATTCAGGGCAATCACAAGGATCCTGAAAGTCAAGAGG950.10142312660809036No Hit
GAGCAGGGGACGATGAAATATACCATAATTATTTCATTATAGCCTCTGCAAA950.10142312660809036No Hit
CAGTAGGGGATTGTGGATTGTGAAAATGGCCCTCTGGAGCAATTGTGCTTTC940.10035551474905782No Hit
TCAGCTAGGGGGTGCTAGGGGGTAAATCAAGGCATCACAATTTCTGTTCAGC940.10035551474905782No Hit
GTTGAGGGGTAATTCAAAGAGCAAATTATAGAAACTACAATGACATTTAATG940.10035551474905782No Hit
ACAATTGGGACAGCCCATGGGACACACATCACCTATTGAATTCCAGGTCTTA940.10035551474905782No Hit
TTATGGGGGGCTACTGAGTACCCTGAAATGTCACGAAGTTGATGCAATGAAA940.10035551474905782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)