FastQCFastQC Report
Sat 31 Dec 2022
SRR5844790.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844790.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69175
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT4440.6418503794723527No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC4340.6273942898445971No Hit
AAGTATGGGTGAACCACCCTTGTGCTCCTCTAGCTTTAACAATGTATACCTG1210.17491868449584388No Hit
ACGCTGGGAGTCACTGGGTATTTGGTTAAAGGTCTCCCACAAGACTGGTATT1110.16046259486808817No Hit
TGATTAGGGCTTGGAGAGAGGTGCTTTACCCCTTGAACTTTCTCAAAAAGAG1030.14889772316588362No Hit
TATGTGAGGGGAGGTTTTCATTTTTATTCTTCCTTCCAACGTGGTGCTATCT1030.14889772316588362No Hit
TGCATGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1020.14745211420310805No Hit
TGTATGGGAGATGTGGCCAGTCCAAGCTGATAAGTGCTATAAGCACAAAATA1020.14745211420310805No Hit
CAGCCCGGGAGAACACAGATAGAAAATGGTGCCCTTACAATATCAAACCTAA1010.14600650524033248No Hit
GATTAAGGGAATGACTAGCTGATAACGTTATCTGAATCCATATGTGGAAATT1010.14600650524033248No Hit
GTAATAGGGGAGCGAGGCCGGTTCTCACACCGTCCAGAGGATGTATGGCTGC1000.14456089627755692No Hit
ATACGGGCAATGTGACGGATTTTTGCAGATTCAAAATCTGCAATGGTTATTT990.14311528731478135No Hit
CTTAAGGGGAAGGAATGAAAGTGTCACGGGTAAAAACTCTAAAAGGTTAATT980.14166967835200578No Hit
GCTGACGGGGGGTGCTCGGCGTACAGCAGACGCTGGAGGAGATGGACTTCGA970.1402240693892302No Hit
TATAACGGGATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATG960.13877846042645464No Hit
TCACTCGGGAGGTACACTTTGGTGTGGTGTGGCGGCGGCAGGGCGCCAAGCG960.13877846042645464No Hit
CCTTTAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA940.1358872425009035No Hit
TCCCAAGGGAAGTGCTGGCATTACAGGCGTGAACCACCGTGCCTGGCCGGAA920.13299602457535237No Hit
TTTCATGGGTAGACCATCTTTAGGACTGCAGTAATTCAGTTAAGATGCTCGG910.1315504156125768No Hit
ATGACTGGGCACGACGCTTTTCCGATCTTTAAATGGGAGTTATGAAGCTTCC910.1315504156125768No Hit
CGCTAGGGAACAACAAAGAGAGCCGGTGTGATGATCGGTCTGGCTTGGGTCA910.1315504156125768No Hit
GCCAATGGGGTTATTTTCATATTTTATTTATGTGGCAAAGAAGATATCTTCT900.13010480664980123No Hit
AGTTCCGGGATATTTAACTGTATTTGTGCTCTATGAAAGTTTCTGTATAACA890.12865919768702566No Hit
GAGAAGGGCACCGTGCCCGGCCTATATACCCTTATTCTTGATTATTTCTTTT880.1272135887242501No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCG880.1272135887242501No Hit
CACACAGGGAATGGTGGTAGCAGCTGAGGTATGGTTGTTGGACGAGGCCGAT870.12576797976147452No Hit
TAAGGCGGGATTGATTTAATTGTGTTCATTTTATTGACTAGAAGAGACAAGA870.12576797976147452No Hit
GCACCTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC870.12576797976147452No Hit
AGTTTTGGGAGACTCCTTGAATTCAAATCTTGGTTCCAATTACCAACTTATA870.12576797976147452No Hit
ATGACTGGGGGTTTTTGTTTGTTGTGGTTCAGTTTTAAGGTTTCCCATAAAT870.12576797976147452No Hit
GTTTACGGGCATGGTGGGGAGGATCATGATGGAATATGTGAATTTCTACTTC870.12576797976147452No Hit
CGCTTCGGGGAATTAAAAGACATTTCTTGATGGGTTTAATGTTTTCTACTAA860.12432237079869894No Hit
GGCGCTGGGTAACCCTTATGCAACTTTACCTCGTGCAAGCAGCGTGATCTCA860.12432237079869894No Hit
GAAGGTGGGATGAATGTCAAGCAAATGGACCAGAAGATCTCAATCGGGCTTG860.12432237079869894No Hit
CTACAAGGGGAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCC860.12432237079869894No Hit
TCACTAGGGCTATTTTTTAATATAGGATTTAGAAACCAAGGGTATGTGTTTT860.12432237079869894No Hit
AGCGCTGGGCGATCTGTTTCAGGGGTTCTTTTTCTCAGTTGAATGCACCAAC850.12287676183592337No Hit
AAACGAGGGAAAAACACTGGCACTTGAATGTTGAATGTCACCGTATGCGTGA850.12287676183592337No Hit
ATACCTGGGTTTTCAAAAAGATGAGATACTACACTCATTTAAATATTTTTAA850.12287676183592337No Hit
TTGTACGGGGTCGCTATGGAATGGGAACGTCTGTTGAGAGAGCGGCAGCCAG840.12143115287314782No Hit
TTTGCCGGGGGCCCTTCGTGGAGGAGGCCAAGCGGCTCCGCGCCCGACACCT840.12143115287314782No Hit
GACATCGGGTACTTTGTTTGCAGACAATATGATCTTATATCCAGAAAAACAA830.11998554391037225No Hit
TGACAAGGGGTTCCTGTCCCAGTGGGTACAATGTAGAGGAAAATGGCCGAGA830.11998554391037225No Hit
TCAAAGGGGACAGTTGCTGATAATAAAAATGGCTCTTAAAGTGGTAGAGTTT830.11998554391037225No Hit
AGCTTAGGGCGATCTTGTTCAGGGGGGCTTTGGGAGACACATTCAAACCATA820.11853993494759668No Hit
GTAATCGGGACGTGGGCTGGGTGGGAAGGTGCTGACGATTTTCACACTGTGT820.11853993494759668No Hit
GTCTTGGGGGCTGGGCTGTTGAGTGGATACCCCTTCCAGTGCCTGGGCTTCA820.11853993494759668No Hit
ACAGCATGGGCAGAATGGAAATGACAAGAAATATCTGCAGTTATCCAGGAGA820.11853993494759668No Hit
TTTTAGGGGATCGCCAGGGCACCAGCTTCTCCAGTTACCTTCCCCTGTAAGT820.11853993494759668No Hit
GTCGCCGGGCACTATGTATAAAGTGAAAGATAGTTTACTTATCTGACTTTGA800.11564871702204554No Hit
TTTGGATGGGCGATCTATAGGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGG800.11564871702204554No Hit
ACAATAGGGGACTTGTCCTAAGTTCACTCAGGAGTTAGGGAGCTGGGAATCA800.11564871702204554No Hit
ACGTCGGGGTGGGCCCAGATGTGGGTTTGCTCAGTATTAGTAGACAAGGTCT790.11420310805926998No Hit
CGTGCCGGGCCCATCTAGATAATTTATAGAAATATAACCCTAATTGGACATG790.11420310805926998No Hit
CAGTACGGGGTTACTAGCCTCAAAATACATCAAAAAATAAGTTAATCAGGAA790.11420310805926998No Hit
AACACAGGGACCATTATGCCCAGTTAACTTTTTTCTTTCTATAGAAATGGAG780.11275749909649439No Hit
CAGAATGGGAGAAAATGTTTGCAATCTACTTATCTGACAAAGGGCTAATATC780.11275749909649439No Hit
GGCCCAGGGCAGTGTGATTTTCCTGTTTGCCTTAAAGTTAAAAATACTTAAT780.11275749909649439No Hit
TTTATAGGGACTGCAGAGGACATGCTTTATCAGTAGGTCCTGAGGGCTCCAG780.11275749909649439No Hit
GCTACTGGGGGGATGAGCCCCCCAGGCTCTGTTGCAGACAAGAGGAAGAACC780.11275749909649439No Hit
GAATTTGGGGGCTTTGGGTACCAGCTCTCAGACCACACCGTCGGTGTCCTTT780.11275749909649439No Hit
AGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAG780.11275749909649439No Hit
TACTCCGGGATGACCCCAATACGCAAAACTAGCCCCTAATAAAATTAATTAA780.11275749909649439No Hit
AAATTAGGGGAGTCTAGTGCTAGCGTAGTTTTCCTGCTCCCTTGTTTTCTCT780.11275749909649439No Hit
ATACGTGGGAGGACATATGAAGAGTGCAATGGCAAAACAAGAGCAAAAAGCA780.11275749909649439No Hit
TTTTCAGGGAAGACCCAAGTGCCTCCTGCTGTTTCCTCCTTTGTGGTAGCCT770.11131189013371882No Hit
GACCTAGGGTCAGATGCTGTCTTTGCAGGTGCCATGCCTACAATGGCAAGCA770.11131189013371882No Hit
CTCTCCGGGACCTGAGGGTCTGTAGGTTGCACACTTTGGTACCAGATAACTT770.11131189013371882No Hit
ACGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA770.11131189013371882No Hit
ATGATGGGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGA770.11131189013371882No Hit
AATTCAGGGGAAAGCAGTATGTTGATTCCTCAAAAACCTAAAAGCAGAACTA770.11131189013371882No Hit
ATCTTTGGGGAAAATTGAATGTTTTTTGGGTCCACATTTCAAGGCTGAAGTG760.10986628117094326No Hit
CTCAACGGGACCGTACAGACTAAGTAATGATTAGGAATTTAAATTTTTAAAT760.10986628117094326No Hit
ACTAGCGGGAACTAAATACTTAGTTTCTCACTAAAAACAGCCATTTTTATTA760.10986628117094326No Hit
GGTATTGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC760.10986628117094326No Hit
TGATAGGGGCTGTAAATGATCGGCTGTAAATGTGAGGCACACCACCCACCCC760.10986628117094326No Hit
CGAGCCGGGGGCCACCCATTCAGGGCATATCTGGAATCTGAAGTTGCTATAT760.10986628117094326No Hit
GTAACCGGGACAAGTCATCTTGGGCTAATTAGCAAAGCCTCAAAGTGCTGTG760.10986628117094326No Hit
TGGCTTGGGAGTGGTAATCCATTTGGATAGTTCCTTAAGAATCCTCTACAAT760.10986628117094326No Hit
TAGCATGGGGATTCTGAGCCGAGCCCGGTGCCAAGCGCAGCTAGCTCAGCAG760.10986628117094326No Hit
TGATTTGGGATTTTGAGAAGAAATTCAAGAATGGAATCAGCAGTTTTAAGGA760.10986628117094326No Hit
ATAAGGGGGATGGTTTACTTTTGTATTCCTCAAGAGCAAGAATAACTGAACA760.10986628117094326No Hit
TAGTCCAGGGGATCTAACCAGGGTACTGACTCCTCAGTCCCTCTTCTGGTTT760.10986628117094326No Hit
AGGTTGGGGTCACCATTTCCCTGTTTTATTGGCTTTAAAGCCACTTTCATCT760.10986628117094326No Hit
AGGCCCAGTTCCACCTCACAGCTGAAATAAGACATCCAGTGCACTGCACGCG760.10986628117094326No Hit
ACCATTGGGAGATCATCTTATTTAAAGCCCATGCTTCACAATGGAGCACATG760.10986628117094326No Hit
TCACCCGGGGAGGCCAGTAACTATTAATGTCTAGTTCTCAGAGCATTTGGAA760.10986628117094326No Hit
GTCTCGCTCCTTGAGTTCATCGGGAACAAAACATTCAAGACAGTCCAACAAC760.10986628117094326No Hit
GCGAACAGGGCATTATTTAAAGTCACGCCTTGTGTTTTTACTACTTTATTCA750.10842067220816769No Hit
CTGAGGTGGGTCTAATAGAAAACTATTATTTATATTGGGAAAGGTAACTATT750.10842067220816769No Hit
AAATCGGGGATTTTTTGCAGCCCGTACCTTCTTGGGAATACAATTGTCTAAC750.10842067220816769No Hit
ACGATTGGGTACCCTCTCATCCTCAGCTTGCTGATGTTCCAGGAGGCCCTCT750.10842067220816769No Hit
ATTACAGGGATTTTATTTGGGAGTGAAATGTCATGATGTTTGTGTTCTATTT750.10842067220816769No Hit
ATGAAGGGGTAGAGAAGAGGTTAAGATTGGAAAATTTTAATTTAAGGGTTTC750.10842067220816769No Hit
GCAAAAGGGATTGTGTAATAACTTGGGTGTTTAGGAGTCTTTTCACATTTTT750.10842067220816769No Hit
CTTGTTAGGGATTTGATAAAATTGATACAAATTATATTTACAACTATTAAAA740.10697506324539212No Hit
GAAATAGGGCACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCA740.10697506324539212No Hit
AAACTCGGGGACATTCCAGCTTGACCTCTCCAGAACACTAATATCCTAAAAT740.10697506324539212No Hit
AATTTGGGTAAGCAAAGCTTATAATGGGCTACTATTAAAAGTTCCATTTAGT740.10697506324539212No Hit
GAGCCGGGGAATAAAATATTTTTAAATTTTGACATAGTGATCATTTAATGAA740.10697506324539212No Hit
TATAGGGGATTGCCTATACTGGAAAAAGACACATTGTTATACTGCATGCTTC740.10697506324539212No Hit
GGTTCCGGGAGATTGTTTCTATTTTAAGTCCTTATTGAAATACTTTTCATTT740.10697506324539212No Hit
AGTCTTGGGAGAGGAGGCATGAAGGATGACCGTCGGGACAGATACTCTGCGG740.10697506324539212No Hit
CTTATAGGGACGCTACTCAACTGTTGTACAAGTTTTGCTCCTAACACCTTGC730.10552945428261655No Hit
TATTACGGGGACGCTCTTCCGATCTTGCACGGGGCACAGGATCTAATCTAGA730.10552945428261655No Hit
GTAAAGGGGTATTGCTTCAAGTACTTAGAGCCTGCCTCCTAAACTGGTGCCT730.10552945428261655No Hit
TGCTTTGGGTAACCTCTCTGCCTCATTTTTCTCCTCTGTAAAGTGAGGATTA730.10552945428261655No Hit
ATGAAAGGGGGGCCCAAGGAATACAGAGTGAATAAATAAATTGATAAATAAT730.10552945428261655No Hit
CCAAATGGGGAGGCCTAACAACTTAACTTTAACATTTTATTTTTGCTGCTCT720.104083845319841No Hit
TGTAAAGGGGTGTAAAACTAGCTTTAGAACATCTTCTTAGAAAGAGAGACTA720.104083845319841No Hit
CGTCCAGGGCTCCAAATGGGACTTTGAGATTTAAAAAATAACCACTTTTTAA720.104083845319841No Hit
TCTCTAGGGCTGAGTTCACAGGACCACAGAATACTGGCCATGGTGCAACTTC720.104083845319841No Hit
GCAGTTGGGATAATTTTTTAAAACATTTTGTTTTTACAAAAATTAAAGGGTA720.104083845319841No Hit
TGTATAGGGGCCCCTTGCTATTCGTGAACTTGTTTACAGTGGGATTTCAGAT720.104083845319841No Hit
ATCGCGGGGAGGCGTACCCTCAGGCCGCCCGCGGCTCCGCGGTCCCCCGGCA720.104083845319841No Hit
CCAAAAGGGGGGGGAAGGGTTGGTTAGGCAATAATTAATTCTAGGGCAGGAA720.104083845319841No Hit
CAAGGTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG720.104083845319841No Hit
GTGCTAGGGAGAGCAGAAGCAGCTGCTGGAGGTGGAACTCTACGCAGACTAT710.10263823635706543No Hit
AATCCAGGGCCAAAGAGAGACAGACCTATGATGGAAAATGATCACGTCTCTG710.10263823635706543No Hit
GTATTAGGGGGGGAACGACGGCGGCCATGGCGGCCTCGGGGCCCGGGTGTCG710.10263823635706543No Hit
CAACTTGGGGGCTGTCTTTTCTTGACTTTGTATCTTCACTGCCAAGCAAAAA710.10263823635706543No Hit
GTTATCGGGGAGTGTCAGGCTCTGAATCTCTCAAAATGTGCCGTCTTTGGTT710.10263823635706543No Hit
ATAGCTGGGTAATGTCTTCTGGCCCTTTGAGCACTACTCTGAGTTAAGTGTA710.10263823635706543No Hit
TTGGCCGGGAAGTAGGCAATACAGAAACTTTTGAGGCTAGAGGGTATAAAGT710.10263823635706543No Hit
AGAATGGGGCATCACATCTTGTGTTTTAGTTTTTTGCTCTATGATTTTTTTC710.10263823635706543No Hit
GCACTCGGGTGCCAAGTATTATGCTAAATTCTGTGGTGCAAAGATGAGAGCT700.10119262739428986No Hit
TGCTCAGGGCGCTCTTCCGATCTGCTCGTGGGGGTAGTCATTCAGTACATCC700.10119262739428986No Hit
TTATAAGGGCAGGGTCAGGGTCATCAGTATCACTGTCTTGCACCTCCACATC700.10119262739428986No Hit
AGAGATGGGCATGTTTTTTTCTTTCCGTTGCTGAAAAATATTTGAAACTTGT700.10119262739428986No Hit
CTAAATGGGACTTCATGAAGCAGACCATTGGGAATTCCTGTGGCACAATCGG700.10119262739428986No Hit
AGGTCAGGGGAAATTACACAAAATGCTAATAGTACTTATTTTATTTAGGCTG700.10119262739428986No Hit
AGCCGCGGGGAGGCTGGCGGGCGCGGGGAAAATGGCGGCGGCGGCGGCGGCG700.10119262739428986No Hit
ACAGAGGGGCAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCC700.10119262739428986No Hit
CTTGGGGGGCTGCCATTCATTTGCTAATTTTTGTGGCGTGGAGATTCTTTTT700.10119262739428986No Hit
GCAGTGGGGAACGCCACCATCAACTTAAAGTGAATTGTCTTTGTTATAAATG700.10119262739428986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)