FastQCFastQC Report
Sat 31 Dec 2022
SRR5844789.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844789.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70198
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT4590.6538647824724351No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC4030.5740904299267786No Hit
AAGTATGGGTGAACCACCCTTGTGCTCCTCTAGCTTTAACAATGTATACCTG1380.1965867973446537No Hit
TATAACGGGATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATG1190.1695204991595202No Hit
TACTCCGGGATGACCCCAATACGCAAAACTAGCCCCTAATAAAATTAATTAA1110.1581241630815693No Hit
CGTGCCGGGCCCATCTAGATAATTTATAGAAATATAACCCTAATTGGACATG1090.15527507906208154No Hit
TCCCAAGGGAAGTGCTGGCATTACAGGCGTGAACCACCGTGCCTGGCCGGAA1060.15100145303284995No Hit
AGCGCTGGGCGATCTGTTTCAGGGGTTCTTTTTCTCAGTTGAATGCACCAAC1060.15100145303284995No Hit
GAGAAGGGCACCGTGCCCGGCCTATATACCCTTATTCTTGATTATTTCTTTT1060.15100145303284995No Hit
CATTCGGGATGGTCATATCAAATGTTCTTTCTTTTTTTGTTCTAAAGGTTGC1040.1481523690133622No Hit
GAATTTGGGGGCTTTGGGTACCAGCTCTCAGACCACACCGTCGGTGTCCTTT1020.1453032849938745No Hit
ACAGAGGGGCAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCC1010.1438787429841306No Hit
TTTTAGGGGATCGCCAGGGCACCAGCTTCTCCAGTTACCTTCCCCTGTAAGT1010.1438787429841306No Hit
CTACAAGGGGAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCC1000.14245420097438674No Hit
ACGCTGGGAGTCACTGGGTATTTGGTTAAAGGTCTCCCACAAGACTGGTATT980.139605116954899No Hit
GTAATAGGGGAGCGAGGCCGGTTCTCACACCGTCCAGAGGATGTATGGCTGC980.139605116954899No Hit
ATCGCGGGGAGGCGTACCCTCAGGCCGCCCGCGGCTCCGCGGTCCCCCGGCA980.139605116954899No Hit
TATTACGGGGACGCTCTTCCGATCTTGCACGGGGCACAGGATCTAATCTAGA960.13675603293541128No Hit
TAAGGCGGGATTGATTTAATTGTGTTCATTTTATTGACTAGAAGAGACAAGA960.13675603293541128No Hit
GGTTCCGGGAGATTGTTTCTATTTTAAGTCCTTATTGAAATACTTTTCATTT960.13675603293541128No Hit
TATGTGAGGGGAGGTTTTCATTTTTATTCTTCCTTCCAACGTGGTGCTATCT950.1353314909256674No Hit
AATTCAGGGGAAAGCAGTATGTTGATTCCTCAAAAACCTAAAAGCAGAACTA940.13390694891592353No Hit
GCAGTTGGGATAATTTTTTAAAACATTTTGTTTTTACAAAAATTAAAGGGTA940.13390694891592353No Hit
ACAGCATGGGCAGAATGGAAATGACAAGAAATATCTGCAGTTATCCAGGAGA940.13390694891592353No Hit
TTGTACGGGGTCGCTATGGAATGGGAACGTCTGTTGAGAGAGCGGCAGCCAG920.13105786489643578No Hit
CTGAGGTGGGTCTAATAGAAAACTATTATTTATATTGGGAAAGGTAACTATT920.13105786489643578No Hit
AGTCACGGGGGGAGCCTCGATCTGAAAGCCAAGCATCACGCAAGGAAGAGGG920.13105786489643578No Hit
TGCTTTGGGTAACCTCTCTGCCTCATTTTTCTCCTCTGTAAAGTGAGGATTA920.13105786489643578No Hit
TGATTAGGGCTTGGAGAGAGGTGCTTTACCCCTTGAACTTTCTCAAAAAGAG920.13105786489643578No Hit
CAGCCCGGGAGAACACAGATAGAAAATGGTGCCCTTACAATATCAAACCTAA920.13105786489643578No Hit
AGTTCCGGGATATTTAACTGTATTTGTGCTCTATGAAAGTTTCTGTATAACA910.12963332288669194No Hit
GTAACCGGGACAAGTCATCTTGGGCTAATTAGCAAAGCCTCAAAGTGCTGTG910.12963332288669194No Hit
GTCGCCGGGCACTATGTATAAAGTGAAAGATAGTTTACTTATCTGACTTTGA900.12820878087694806No Hit
TCTACTGGGATCACGGGGGATGCAGACATTGACCATGACCAGGCGCTGGCTC900.12820878087694806No Hit
TCAAGAGGGATCCTCCAATAACCTCTACTCTGATGTTACAGTGAGTAGTTCG900.12820878087694806No Hit
TCTCTAGGGCTGAGTTCACAGGACCACAGAATACTGGCCATGGTGCAACTTC900.12820878087694806No Hit
CCTTTAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA900.12820878087694806No Hit
AACACAGGGACCATTATGCCCAGTTAACTTTTTTCTTTCTATAGAAATGGAG890.1267842388672042No Hit
GACCTTGGGGAAGAAAGGCATTAAGTCCTCCATTGGCCGCTTGTTTGGCAAG880.12535969685746032No Hit
TGTATGGGAGATGTGGCCAGTCCAAGCTGATAAGTGCTATAAGCACAAAATA880.12535969685746032No Hit
ATACGGGCAATGTGACGGATTTTTGCAGATTCAAAATCTGCAATGGTTATTT870.12393515484771646No Hit
TTTGCCGGGGGCCCTTCGTGGAGGAGGCCAAGCGGCTCCGCGCCCGACACCT870.12393515484771646No Hit
GCTATCGGGGGTTTACTTGAAGAGAAAGAGTTCAACCAGAATATAGGCATTA870.12393515484771646No Hit
TGACAAGGGGTTCCTGTCCCAGTGGGTACAATGTAGAGGAAAATGGCCGAGA860.1225106128379726No Hit
CAGGCTGGGTAATAAATTAATTGGCAAGAACTTTAGAAAAAAACATTTTAAT860.1225106128379726No Hit
GTAATCGGGACGTGGGCTGGGTGGGAAGGTGCTGACGATTTTCACACTGTGT850.12108607082822873No Hit
ACAAAAGGGTTTGAACATGGTCTAGTGACACGGTAGCACCAGTTGCAGGAAG850.12108607082822873No Hit
GAAGGTGGGATGAATGTCAAGCAAATGGACCAGAAGATCTCAATCGGGCTTG850.12108607082822873No Hit
CCATATGGGGCTCTCTATTCTGTTCCGTTTGTCTAGGTGTCTGTTTTTATGT850.12108607082822873No Hit
CACACAGGGAATGGTGGTAGCAGCTGAGGTATGGTTGTTGGACGAGGCCGAT840.11966152881848487No Hit
ACGTCGGGGTGGGCCCAGATGTGGGTTTGCTCAGTATTAGTAGACAAGGTCT840.11966152881848487No Hit
TGTATAGGGGCCCCTTGCTATTCGTGAACTTGTTTACAGTGGGATTTCAGAT840.11966152881848487No Hit
CCAAATGGGGAGGCCTAACAACTTAACTTTAACATTTTATTTTTGCTGCTCT830.11823698680874098No Hit
TTTTCAGGGAAGACCCAAGTGCCTCCTGCTGTTTCCTCCTTTGTGGTAGCCT830.11823698680874098No Hit
ACTAGCGGGAACTAAATACTTAGTTTCTCACTAAAAACAGCCATTTTTATTA830.11823698680874098No Hit
TCACTCGGGAGGTACACTTTGGTGTGGTGTGGCGGCGGCAGGGCGCCAAGCG830.11823698680874098No Hit
TTTAGCGGGGGGGTTGAGAAGGAGGAGTTTTTAAAATTTTTTTACCCTTTCC830.11823698680874098No Hit
TAAACAGGGGTTTCCATCCTAGCCTTGGTTGTGCTGGAACTCAGGCTGGAGC830.11823698680874098No Hit
CTTGTTAGGGATTTGATAAAATTGATACAAATTATATTTACAACTATTAAAA820.11681244479899713No Hit
TGCATGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT820.11681244479899713No Hit
CAATTTGGGCACCTCCTCTGGCGTTGAAGACTTACGCACCTTCATGTCGTTG820.11681244479899713No Hit
CGAGCCGGGGGCCACCCATTCAGGGCATATCTGGAATCTGAAGTTGCTATAT820.11681244479899713No Hit
ATGACTGGGCACGACGCTTTTCCGATCTTTAAATGGGAGTTATGAAGCTTCC820.11681244479899713No Hit
TGATTTGGGATTTTGAGAAGAAATTCAAGAATGGAATCAGCAGTTTTAAGGA820.11681244479899713No Hit
AGGCCCAGTTCCACCTCACAGCTGAAATAAGACATCCAGTGCACTGCACGCG820.11681244479899713No Hit
ACCATTGGGAGATCATCTTATTTAAAGCCCATGCTTCACAATGGAGCACATG820.11681244479899713No Hit
TAGCATGGGGATTCTGAGCCGAGCCCGGTGCCAAGCGCAGCTAGCTCAGCAG810.11538790278925325No Hit
GGCTGGGATCAAAGTAAAAAAGTAGTGCCTGTATTCCATGTGTGGAGTAAAT810.11538790278925325No Hit
TCACTAGGGCTATTTTTTAATATAGGATTTAGAAACCAAGGGTATGTGTTTT810.11538790278925325No Hit
CAAGGTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG810.11538790278925325No Hit
AGCGATGGGGGGCTCTTACCAAGTTTAAACACAAAATTTATCATAACAAAAA800.11396336077950939No Hit
GAAATAGGGCACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCA800.11396336077950939No Hit
TGTTTAGGGATGGATATACCATATTTGGTCTGTTAATTGGATGATGGGTGTT800.11396336077950939No Hit
TAACAGGGCATACTGCCTATCTAAATAACAAAATAATAATTTTTCACCATGT800.11396336077950939No Hit
CGTTGCGGGGTCTATTATCTGTTTAAGTCTCATAACTCTATTTTTAGTTTGC800.11396336077950939No Hit
TATAGGGGATTGCCTATACTGGAAAAAGACACATTGTTATACTGCATGCTTC800.11396336077950939No Hit
AGACTGGGGTGCCAGAGAACTTAAAGTCTTAGAATGGAAAAAGTAAAGAAAT800.11396336077950939No Hit
CCAAATGGCGGGAAATGGGAGGTAGTAATTTCAAGCGATTCTGATGTTGGTG790.11253881876976551No Hit
TGTTCAGGGAGCTACATGACAGTGCTGTTTTATTTGAACAACGTCACTGGTG790.11253881876976551No Hit
ATGCCAGGGTGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA790.11253881876976551No Hit
TGATAGGGGCTGTAAATGATCGGCTGTAAATGTGAGGCACACCACCCACCCC790.11253881876976551No Hit
ATAAATGGGAGTCTCCCTCATGTACTTTTGCTGTTTTACACAGAGAAACAGG790.11253881876976551No Hit
TGTGGCGGGAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC790.11253881876976551No Hit
GCTACAGGGCACCTGGGGAATGATAATCTGCTTGAAATCAAGCCTTATTGCT790.11253881876976551No Hit
GTTTACGGGCATGGTGGGGAGGATCATGATGGAATATGTGAATTTCTACTTC790.11253881876976551No Hit
TTGTCTGGGATATCTGGTTGCTTTCAAATACTATTTATTCCCCTCAAAACTC780.11111427676002165No Hit
GACATCGGGTACTTTGTTTGCAGACAATATGATCTTATATCCAGAAAAACAA780.11111427676002165No Hit
TTATAAGGGCAGGGTCAGGGTCATCAGTATCACTGTCTTGCACCTCCACATC780.11111427676002165No Hit
TTACAATCGGGGAGTGTAAACAATGTGGAAAAACCTTCACTTGGTCCTCAAC780.11111427676002165No Hit
TTTGGATGGGCGATCTATAGGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGG780.11111427676002165No Hit
GATTAAGGGAATGACTAGCTGATAACGTTATCTGAATCCATATGTGGAAATT780.11111427676002165No Hit
CTTAAGGGGAAGGAATGAAAGTGTCACGGGTAAAAACTCTAAAAGGTTAATT770.1096897347502778No Hit
AATTTGGGTAAGCAAAGCTTATAATGGGCTACTATTAAAAGTTCCATTTAGT770.1096897347502778No Hit
AGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAG770.1096897347502778No Hit
CGCTAGGGAACAACAAAGAGAGCCGGTGTGATGATCGGTCTGGCTTGGGTCA770.1096897347502778No Hit
ATAAGGGGGATGGTTTACTTTTGTATTCCTCAAGAGCAAGAATAACTGAACA770.1096897347502778No Hit
AATGGAGGGATTGCAAGAAGTTCTTGAGCTGAATTCCTGTTGTGACAACTTC760.10826519274053392No Hit
CTCTCCGGGACCTGAGGGTCTGTAGGTTGCACACTTTGGTACCAGATAACTT760.10826519274053392No Hit
TAATTGGGGACCACTGCTTTCTCTTCCAACAGTGATCTGTATTCTTAGTTTC760.10826519274053392No Hit
GGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCTCCTTGGAA760.10826519274053392No Hit
GCCAATGGGGTTATTTTCATATTTTATTTATGTGGCAAAGAAGATATCTTCT760.10826519274053392No Hit
CTCTCTGTGGGTGTATTGAAACTTGGACATCAGCATAGCTACGGAAGAATAG760.10826519274053392No Hit
ATGCAAGGGTAACTTGTTAAGCAAGTATGGTCTTGATAATGCATTAGAAAAA760.10826519274053392No Hit
GCACTCGGGTGCCAAGTATTATGCTAAATTCTGTGGTGCAAAGATGAGAGCT750.10684065073079006No Hit
ACGATTGGGTACCCTCTCATCCTCAGCTTGCTGATGTTCCAGGAGGCCCTCT750.10684065073079006No Hit
ATAGCTGGGTAATGTCTTCTGGCCCTTTGAGCACTACTCTGAGTTAAGTGTA750.10684065073079006No Hit
GGAACGGGAGAGTTTGTGCGGCGACATGAAACTGCTTACCCACAATCTGCTG750.10684065073079006No Hit
ATTACAGGGATTTTATTTGGGAGTGAAATGTCATGATGTTTGTGTTCTATTT750.10684065073079006No Hit
CAGTGGGCTCTAATAATGAGAGACCTGCTGGTGACCGAGTTTGACAATTCTA750.10684065073079006No Hit
TAACTGGGGGCACAATAATTTTGTTAAAATTACTAAATATTAGTAAAAAATT750.10684065073079006No Hit
TTTCATGGGTAGACCATCTTTAGGACTGCAGTAATTCAGTTAAGATGCTCGG740.10541610872104618No Hit
CTGAATGGGAACTGAACATGCTTTTCAGAAATGATTACACTCATAACTATCA740.10541610872104618No Hit
ATGAACGGGGGCATTCACACGGGCCAGTTTGTGTATTGCGGCAAGAAGGCCC740.10541610872104618No Hit
GAGCCGGGGAATAAAATATTTTTAAATTTTGACATAGTGATCATTTAATGAA740.10541610872104618No Hit
AAACGAGGGAAAAACACTGGCACTTGAATGTTGAATGTCACCGTATGCGTGA740.10541610872104618No Hit
GTCTTGGGGGCTGGGCTGTTGAGTGGATACCCCTTCCAGTGCCTGGGCTTCA740.10541610872104618No Hit
GCTGACGGGGGGTGCTCGGCGTACAGCAGACGCTGGAGGAGATGGACTTCGA740.10541610872104618No Hit
ATTTAAGGGTCTGGAATGGGGGTGTGATATTATCCTATCTTTAATAAAGTCC730.10399156671130232No Hit
TGCTCAGGGCGCTCTTCCGATCTGCTCGTGGGGGTAGTCATTCAGTACATCC730.10399156671130232No Hit
ATGTTTGGGGGGGGAAGGTCAGCGCCGTAATGGCGTTCTTGGCGTCGGGACC730.10399156671130232No Hit
GCAGTGGGGGCTTTTCACAAGATGGCGCCGAAAGCGAAGAAGGAAGCTCCTG730.10399156671130232No Hit
GTTCTGGGAGGGCAGGGCACGGCATGGAAGGGGTTGGGTTATTCCAAATCAC730.10399156671130232No Hit
AGTGCAGGGTATATTTAGATTGAGTCATTAATGATAAGCATTACCTTTTTGT730.10399156671130232No Hit
ATGACTGGGGGTTTTTGTTTGTTGTGGTTCAGTTTTAAGGTTTCCCATAAAT730.10399156671130232No Hit
ATGGTGGGGGATTAGTGTCTAGAGTTGTTATAATCTATTATCTGAAATGCCC730.10399156671130232No Hit
CGCTTCGGGGAATTAAAAGACATTTCTTGATGGGTTTAATGTTTTCTACTAA720.10256702470155844No Hit
TAGTGAGGGGGAAGGGGGACGATGGGAAATCATGGACTTGTAAGTTGTATTT720.10256702470155844No Hit
GGCGCTGGGTAACCCTTATGCAACTTTACCTCGTGCAAGCAGCGTGATCTCA720.10256702470155844No Hit
TCGTTTGGGGATCTATATGATTGAGCCCATTGATGAGTACTGTGTCCAACAG720.10256702470155844No Hit
GCACCTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC720.10256702470155844No Hit
TTTATAGGGACTGCAGAGGACATGCTTTATCAGTAGGTCCTGAGGGCTCCAG720.10256702470155844No Hit
AGTTTTGGGAGACTCCTTGAATTCAAATCTTGGTTCCAATTACCAACTTATA720.10256702470155844No Hit
AATGAGGGCAATGAATTTTACTTGAATATTGTATGTTGCATTCCACTTCATT720.10256702470155844No Hit
GTGCTAGGGAGAGCAGAAGCAGCTGCTGGAGGTGGAACTCTACGCAGACTAT720.10256702470155844No Hit
AGAGATGGGCATGTTTTTTTCTTTCCGTTGCTGAAAAATATTTGAAACTTGT720.10256702470155844No Hit
TCGTACGGGGTGATTTTTCCTTTTAATTTTATTGCTCAGAAATGAGGCATAT720.10256702470155844No Hit
AGCTTAGGGAGATGTGGCTTGCTCTAAGAATAAACCATTTATATAACCCACT720.10256702470155844No Hit
GTATGGGGGACAGTAGGGAAGAGAATATATATTTTTTTCCTTTTTGCCTTAA720.10256702470155844No Hit
CTTGTTGGGATACTTCATATACTTTCTCTTTTTTGGTGGGGGCGTAGGGTAG720.10256702470155844No Hit
GCAAAAGGGATTGTGTAATAACTTGGGTGTTTAGGAGTCTTTTCACATTTTT720.10256702470155844No Hit
CAAACAGGGGGGACGAGGGCCAGCTGGCCTCGGAGGAGGAGGAGGCGGAGCA720.10256702470155844No Hit
ACTGCGGGATGGCTCACTGCAGCCTCCGGCATCCAGGTTCAGGCAGTCCTCC720.10256702470155844No Hit
GTAAGTGGGCAAGATCCAAGATGCACACCGGCTGCACCATGTCAGCAGCCTG720.10256702470155844No Hit
AAATGGTGGGGGATAAAAAACTTTTTTCATTGTGGTCTTAACACTTTTATAT720.10256702470155844No Hit
ATACGTGGGAGGACATATGAAGAGTGCAATGGCAAAACAAGAGCAAAAAGCA720.10256702470155844No Hit
AATCCAGGGCCAAAGAGAGACAGACCTATGATGGAAAATGATCACGTCTCTG710.10114248269181458No Hit
ACAACAGGGGAACTATGGCTACATTAGTGAAAGCCTACCTAGGTATCTTCTC710.10114248269181458No Hit
GTTATCGGGGAGTGTCAGGCTCTGAATCTCTCAAAATGTGCCGTCTTTGGTT710.10114248269181458No Hit
ATGTCGGGAGAGTAACTTTACTCTGTGTTTAAAAAGTAAGTTAATAATGTAT710.10114248269181458No Hit
AGCCGCGGGGAGGCTGGCGGGCGCGGGGAAAATGGCGGCGGCGGCGGCGGCG710.10114248269181458No Hit
TCTCACGGGAGAGGATTCAAGATGCCCTCTGTGCTATTAATAATGGGAAATG710.10114248269181458No Hit
TAGTCCAGGGGATCTAACCAGGGTACTGACTCCTCAGTCCCTCTTCTGGTTT710.10114248269181458No Hit
GTCAATGGGCAGCCTGGATATTTACTTGGAAGGAATGTTCCCCAACTGGACT710.10114248269181458No Hit
ACATGTGGGCCGATCTATAGGAGGGAAAGTGTCACGTCTTCTAGGCCTACCT710.10114248269181458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)