FastQCFastQC Report
Sat 31 Dec 2022
SRR5844788.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844788.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67703
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT4280.6321728726939723No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC3890.5745683352288673No Hit
AAGTATGGGTGAACCACCCTTGTGCTCCTCTAGCTTTAACAATGTATACCTG1300.19201512488368316No Hit
CACACAGGGAATGGTGGTAGCAGCTGAGGTATGGTTGTTGGACGAGGCCGAT1260.18610696719495443No Hit
TATAACGGGATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATG1110.16395137586222175No Hit
TGTATGGGAGATGTGGCCAGTCCAAGCTGATAAGTGCTATAAGCACAAAATA1110.16395137586222175No Hit
ACGCTGGGAGTCACTGGGTATTTGGTTAAAGGTCTCCCACAAGACTGGTATT1050.15508913932912868No Hit
TGATTAGGGCTTGGAGAGAGGTGCTTTACCCCTTGAACTTTCTCAAAAAGAG1000.1477039422182178No Hit
GTTTACGGGCATGGTGGGGAGGATCATGATGGAATATGTGAATTTCTACTTC980.14474986337385345No Hit
TGTGGCGGGAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC960.1417957845294891No Hit
TAACAGGGCATACTGCCTATCTAAATAACAAAATAATAATTTTTCACCATGT950.1403187451073069No Hit
CAGCCCGGGAGAACACAGATAGAAAATGGTGCCCTTACAATATCAAACCTAA940.13884170568512474No Hit
CAGGCTGGGTAATAAATTAATTGGCAAGAACTTTAGAAAAAAACATTTTAAT930.13736466626294255No Hit
AACACAGGGACCATTATGCCCAGTTAACTTTTTTCTTTCTATAGAAATGGAG920.1358876268407604No Hit
TCCCAAGGGAAGTGCTGGCATTACAGGCGTGAACCACCGTGCCTGGCCGGAA920.1358876268407604No Hit
GTCGCCGGGCACTATGTATAAAGTGAAAGATAGTTTACTTATCTGACTTTGA910.1344105874185782No Hit
GCAAAAGGGATTGTGTAATAACTTGGGTGTTTAGGAGTCTTTTCACATTTTT910.1344105874185782No Hit
CTCTCTGTGGGTGTATTGAAACTTGGACATCAGCATAGCTACGGAAGAATAG910.1344105874185782No Hit
GACCTTGGGGAAGAAAGGCATTAAGTCCTCCATTGGCCGCTTGTTTGGCAAG900.132933547996396No Hit
ATACCTGGGTTTTCAAAAAGATGAGATACTACACTCATTTAAATATTTTTAA900.132933547996396No Hit
ACAGCATGGGCAGAATGGAAATGACAAGAAATATCTGCAGTTATCCAGGAGA900.132933547996396No Hit
GTAATCGGGACGTGGGCTGGGTGGGAAGGTGCTGACGATTTTCACACTGTGT890.13145650857421384No Hit
TAAGGCGGGATTGATTTAATTGTGTTCATTTTATTGACTAGAAGAGACAAGA890.13145650857421384No Hit
AGCGCTGGGCGATCTGTTTCAGGGGTTCTTTTTCTCAGTTGAATGCACCAAC890.13145650857421384No Hit
TTTCATGGGTAGACCATCTTTAGGACTGCAGTAATTCAGTTAAGATGCTCGG870.1285024297298495No Hit
AGTTTTGGGAGACTCCTTGAATTCAAATCTTGGTTCCAATTACCAACTTATA870.1285024297298495No Hit
CAGTACGGGGTTACTAGCCTCAAAATACATCAAAAAATAAGTTAATCAGGAA870.1285024297298495No Hit
CCAAATGGCGGGAAATGGGAGGTAGTAATTTCAAGCGATTCTGATGTTGGTG860.12702539030766732No Hit
CTACAAGGGGAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCC860.12702539030766732No Hit
TCGCAAGGGAAGATGGGGCTACTTTACGATTCACATTTAATTTAAAAAAAAG860.12702539030766732No Hit
TATGTGAGGGGAGGTTTTCATTTTTATTCTTCCTTCCAACGTGGTGCTATCT860.12702539030766732No Hit
GATTAAGGGAATGACTAGCTGATAACGTTATCTGAATCCATATGTGGAAATT860.12702539030766732No Hit
TCACTAGGGCTATTTTTTAATATAGGATTTAGAAACCAAGGGTATGTGTTTT860.12702539030766732No Hit
GTAACCGGGACAAGTCATCTTGGGCTAATTAGCAAAGCCTCAAAGTGCTGTG850.12554835088548513No Hit
GAGAAGGGCACCGTGCCCGGCCTATATACCCTTATTCTTGATTATTTCTTTT850.12554835088548513No Hit
CTGAGGTGGGTCTAATAGAAAACTATTATTTATATTGGGAAAGGTAACTATT840.12407131146330294No Hit
GGAACGGGAGAGTTTGTGCGGCGACATGAAACTGCTTACCCACAATCTGCTG840.12407131146330294No Hit
ATGAACGGGGGCATTCACACGGGCCAGTTTGTGTATTGCGGCAAGAAGGCCC830.12259427204112078No Hit
ATGACTGGGGGTTTTTGTTTGTTGTGGTTCAGTTTTAAGGTTTCCCATAAAT830.12259427204112078No Hit
CTTAAGGGGAAGGAATGAAAGTGTCACGGGTAAAAACTCTAAAAGGTTAATT820.1211172326189386No Hit
ATGCCAGGGTGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA820.1211172326189386No Hit
CTGAATGGGAACTGAACATGCTTTTCAGAAATGATTACACTCATAACTATCA820.1211172326189386No Hit
ATAAGGGGGATGGTTTACTTTTGTATTCCTCAAGAGCAAGAATAACTGAACA820.1211172326189386No Hit
GTAAGTGGGCAAGATCCAAGATGCACACCGGCTGCACCATGTCAGCAGCCTG820.1211172326189386No Hit
CAAGGTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG820.1211172326189386No Hit
CAGAATGGGAGAAAATGTTTGCAATCTACTTATCTGACAAAGGGCTAATATC810.11964019319675642No Hit
AAATCGGGGATTTTTTGCAGCCCGTACCTTCTTGGGAATACAATTGTCTAAC810.11964019319675642No Hit
TGCTTTGGGTAACCTCTCTGCCTCATTTTTCTCCTCTGTAAAGTGAGGATTA810.11964019319675642No Hit
AAACGAGGGAAAAACACTGGCACTTGAATGTTGAATGTCACCGTATGCGTGA810.11964019319675642No Hit
ACAGAGGGGCAGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCC810.11964019319675642No Hit
ATCGCGGGGAGGCGTACCCTCAGGCCGCCCGCGGCTCCGCGGTCCCCCGGCA810.11964019319675642No Hit
GTCTCGCTCCTTGAGTTCATCGGGAACAAAACATTCAAGACAGTCCAACAAC810.11964019319675642No Hit
GACATCGGGTACTTTGTTTGCAGACAATATGATCTTATATCCAGAAAAACAA800.11816315377457424No Hit
ACTAGCGGGAACTAAATACTTAGTTTCTCACTAAAAACAGCCATTTTTATTA800.11816315377457424No Hit
ACGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA800.11816315377457424No Hit
GCCAATGGGGTTATTTTCATATTTTATTTATGTGGCAAAGAAGATATCTTCT800.11816315377457424No Hit
GTTATGGGTGTCTTGTAATTATAGGCCACTTGACATTTTGGTATGGAAGTAA800.11816315377457424No Hit
ACCATTGGGAGATCATCTTATTTAAAGCCCATGCTTCACAATGGAGCACATG800.11816315377457424No Hit
TCAAGAGGGATCCTCCAATAACCTCTACTCTGATGTTACAGTGAGTAGTTCG790.11668611435239205No Hit
CCATATGGGGCTCTCTATTCTGTTCCGTTTGTCTAGGTGTCTGTTTTTATGT790.11668611435239205No Hit
CGTTGCGGGGTCTATTATCTGTTTAAGTCTCATAACTCTATTTTTAGTTTGC790.11668611435239205No Hit
ACGAACGGGGATCCTAAGTAAACAAAAGTCCTAAAGTTTTATATATAAGTAT790.11668611435239205No Hit
AGGCCCAGTTCCACCTCACAGCTGAAATAAGACATCCAGTGCACTGCACGCG790.11668611435239205No Hit
GACCTAGGGTCAGATGCTGTCTTTGCAGGTGCCATGCCTACAATGGCAAGCA780.11520907493020988No Hit
TCTCTAGGGCTGAGTTCACAGGACCACAGAATACTGGCCATGGTGCAACTTC780.11520907493020988No Hit
GCAGTTGGGATAATTTTTTAAAACATTTTGTTTTTACAAAAATTAAAGGGTA780.11520907493020988No Hit
ACACTGGGGCAATAACTCCTCCCAGGGTTTTAACTTTGTTTTATTTTCAAAA770.11373203550802771No Hit
TATTACGGGGACGCTCTTCCGATCTTGCACGGGGCACAGGATCTAATCTAGA770.11373203550802771No Hit
TTATAAGGGCAGGGTCAGGGTCATCAGTATCACTGTCTTGCACCTCCACATC770.11373203550802771No Hit
CTCTCCGGGACCTGAGGGTCTGTAGGTTGCACACTTTGGTACCAGATAACTT770.11373203550802771No Hit
TGTTCCGGGGATCTTACCGTGGGAGGTGTCCTGATTTGAATGTACTATTTGA770.11373203550802771No Hit
ATGTCGGGAGAGTAACTTTACTCTGTGTTTAAAAAGTAAGTTAATAATGTAT770.11373203550802771No Hit
CATTCGGGATGGTCATATCAAATGTTCTTTCTTTTTTTGTTCTAAAGGTTGC770.11373203550802771No Hit
CGTGCCGGGCCCATCTAGATAATTTATAGAAATATAACCCTAATTGGACATG770.11373203550802771No Hit
TTACGCGGGGGGCCAGATCCTAAAGCTCTTTCAGGGAGCTCTTCTCTGGGGC760.11225499608584553No Hit
AGTCACGGGGGGAGCCTCGATCTGAAAGCCAAGCATCACGCAAGGAAGAGGG760.11225499608584553No Hit
AATGAGGGCAATGAATTTTACTTGAATATTGTATGTTGCATTCCACTTCATT760.11225499608584553No Hit
GAAGGTGGGATGAATGTCAAGCAAATGGACCAGAAGATCTCAATCGGGCTTG760.11225499608584553No Hit
AGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAG760.11225499608584553No Hit
TACTCCGGGATGACCCCAATACGCAAAACTAGCCCCTAATAAAATTAATTAA760.11225499608584553No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCG760.11225499608584553No Hit
CGCTTCGGGGAATTAAAAGACATTTCTTGATGGGTTTAATGTTTTCTACTAA750.11077795666366336No Hit
AGCTTAGGGCGATCTTGTTCAGGGGGGCTTTGGGAGACACATTCAAACCATA750.11077795666366336No Hit
TGACAAGGGGTTCCTGTCCCAGTGGGTACAATGTAGAGGAAAATGGCCGAGA750.11077795666366336No Hit
TCACTCGGGAGGTACACTTTGGTGTGGTGTGGCGGCGGCAGGGCGCCAAGCG750.11077795666366336No Hit
CGAGCCGGGGGCCACCCATTCAGGGCATATCTGGAATCTGAAGTTGCTATAT750.11077795666366336No Hit
GACTGCGGGTGCTTTTTTCCTAGTCAAAGTAAACAAGTATGGAGATACTTGG750.11077795666366336No Hit
GTCAATGGGCAGCCTGGATATTTACTTGGAAGGAATGTTCCCCAACTGGACT750.11077795666366336No Hit
TCGTTTGGGGATCTATATGATTGAGCCCATTGATGAGTACTGTGTCCAACAG740.10930091724148118No Hit
CAGTAGGGGAGCACAAACTTGCTAGCTAATTAGAGTTTATCTTTTTAGAAAG740.10930091724148118No Hit
CCACTCGGGGGGTTGATCAAGCTAATACTTAATTGCAAATATCCCTTGTATG740.10930091724148118No Hit
AGCACGGGGTATATTTTTGTTCTTTATAATGTAAAACTTGAGGATGTTTAGG740.10930091724148118No Hit
GTTATCGGGGAGTGTCAGGCTCTGAATCTCTCAAAATGTGCCGTCTTTGGTT740.10930091724148118No Hit
CTACACGGAAGAAGAAACGCAAGAAATGTTAGAAGAAGCAAAGAAAAATTTG740.10930091724148118No Hit
AGCTTAGGGAGATGTGGCTTGCTCTAAGAATAAACCATTTATATAACCCACT740.10930091724148118No Hit
GTCTTGGGGGCTGGGCTGTTGAGTGGATACCCCTTCCAGTGCCTGGGCTTCA740.10930091724148118No Hit
GTAATAGGGGAGCGAGGCCGGTTCTCACACCGTCCAGAGGATGTATGGCTGC740.10930091724148118No Hit
GTTCTGGGGTTTATCCATTTATTTGGTTGAGCACATGGTGGGCTGTTTCACT740.10930091724148118No Hit
GCGAACAGGGCATTATTTAAAGTCACGCCTTGTGTTTTTACTACTTTATTCA730.10782387781929899No Hit
ATACGGGCAATGTGACGGATTTTTGCAGATTCAAAATCTGCAATGGTTATTT730.10782387781929899No Hit
TGCATGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT730.10782387781929899No Hit
AGAGATGGGCATGTTTTTTTCTTTCCGTTGCTGAAAAATATTTGAAACTTGT730.10782387781929899No Hit
CTAAATGGGACTTCATGAAGCAGACCATTGGGAATTCCTGTGGCACAATCGG730.10782387781929899No Hit
ACTCCTGGGATTGCTTCAATGATCATCAAGCATAAAATGAGGGATACTGATA730.10782387781929899No Hit
AGCCGCGGGGAGGCTGGCGGGCGCGGGGAAAATGGCGGCGGCGGCGGCGGCG730.10782387781929899No Hit
AGGCTTGGGGAAATGCAACATTACGCTTACAAACAGTACTGTCAAACCTCAA730.10782387781929899No Hit
TAGGTAAGGGTTACAGGTGTGAGCCAGGGAGCCAGCCTAAACACCATACTTA730.10782387781929899No Hit
GAAATAGGGCACTTATCCCCACCCTGGCTATCATCACCCGATGAGGCAACCA720.10634683839711681No Hit
TTGTACGGGGTCGCTATGGAATGGGAACGTCTGTTGAGAGAGCGGCAGCCAG720.10634683839711681No Hit
TTTAATGGGAGCCTAATCAGGCCTGATGTGCACACCTTCACTATAAGATAAA720.10634683839711681No Hit
CCTTTAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA720.10634683839711681No Hit
ACAATAGGGGACTTGTCCTAAGTTCACTCAGGAGTTAGGGAGCTGGGAATCA720.10634683839711681No Hit
GCACTCGGGTGCCAAGTATTATGCTAAATTCTGTGGTGCAAAGATGAGAGCT710.10486979897493465No Hit
TAGTGAGGGGGAAGGGGGACGATGGGAAATCATGGACTTGTAAGTTGTATTT710.10486979897493465No Hit
GTACATGGGGCACCGTCATAACAATTGATTGCCATAGCAAGTTCCAAAGTGA710.10486979897493465No Hit
AGCGATGGGGGGCTCTTACCAAGTTTAAACACAAAATTTATCATAACAAAAA710.10486979897493465No Hit
GCACCTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC710.10486979897493465No Hit
GCAGTGGGGGCTTTTCACAAGATGGCGCCGAAAGCGAAGAAGGAAGCTCCTG710.10486979897493465No Hit
ATGACTGGGCACGACGCTTTTCCGATCTTTAAATGGGAGTTATGAAGCTTCC710.10486979897493465No Hit
TAGCATGGGGATTCTGAGCCGAGCCCGGTGCCAAGCGCAGCTAGCTCAGCAG710.10486979897493465No Hit
TGTATAGGGGCCCCTTGCTATTCGTGAACTTGTTTACAGTGGGATTTCAGAT710.10486979897493465No Hit
TAACTGGGGGCACAATAATTTTGTTAAAATTACTAAATATTAGTAAAAAATT710.10486979897493465No Hit
GCTATCGGGGGTTTACTTGAAGAGAAAGAGTTCAACCAGAATATAGGCATTA710.10486979897493465No Hit
TTTAGCGGGGGGGTTGAGAAGGAGGAGTTTTTAAAATTTTTTTACCCTTTCC700.10339275955275247No Hit
GTTTACGGGCATCATCATGCCTTTTTTTCCCTCCCTGAGGCGCCTTGGCAGA700.10339275955275247No Hit
GGTTCCGGGAGATTGTTTCTATTTTAAGTCCTTATTGAAATACTTTTCATTT700.10339275955275247No Hit
ATTTAAGGGTCTGGAATGGGGGTGTGATATTATCCTATCTTTAATAAAGTCC690.10191572013057029No Hit
TGTTCAGGGAGCTACATGACAGTGCTGTTTTATTTGAACAACGTCACTGGTG690.10191572013057029No Hit
GCTACTGGGGGGATGAGCCCCCCAGGCTCTGTTGCAGACAAGAGGAAGAACC690.10191572013057029No Hit
GAATTTGGGGGCTTTGGGTACCAGCTCTCAGACCACACCGTCGGTGTCCTTT690.10191572013057029No Hit
TAAATAGGGACCTACATATCTTCAGCGTAGATAATGAAGACTATCTGTCAAA690.10191572013057029No Hit
CAATAAGGGTCATGCACGTCTCTTAGTGCCGTGTTCCCTTAATGCTGAGTCA690.10191572013057029No Hit
CGCTAGGGAACAACAAAGAGAGCCGGTGTGATGATCGGTCTGGCTTGGGTCA690.10191572013057029No Hit
TCACATGGGATTGCAAATAGATGGAATTACAGCAAAATGTGCTCAATGTATT690.10191572013057029No Hit
ATCAATGGGGGCTTCGCTTAGCAGGTTTGCAATTGACTTCAACATGCAGGCT690.10191572013057029No Hit
TCACCCGGGGAGGCCAGTAACTATTAATGTCTAGTTCTCAGAGCATTTGGAA690.10191572013057029No Hit
GGCGCTGGGTAACCCTTATGCAACTTTACCTCGTGCAAGCAGCGTGATCTCA680.1004386807083881No Hit
ATGTGTGGGAGGCTAAGGGGAGACTGCTCTGATTCTCTAGGCAGTGACTGCC680.1004386807083881No Hit
AATTCAGGGGAAAGCAGTATGTTGATTCCTCAAAAACCTAAAAGCAGAACTA680.1004386807083881No Hit
TGATTTGGGATTTTGAGAAGAAATTCAAGAATGGAATCAGCAGTTTTAAGGA680.1004386807083881No Hit
ACGTCGGGGTGGGCCCAGATGTGGGTTTGCTCAGTATTAGTAGACAAGGTCT680.1004386807083881No Hit
AGAATGGGGCATCACATCTTGTGTTTTAGTTTTTTGCTCTATGATTTTTTTC680.1004386807083881No Hit
TTTTAGGGGATCGCCAGGGCACCAGCTTCTCCAGTTACCTTCCCCTGTAAGT680.1004386807083881No Hit
GTGCGAGGGTACTTAAGCACTTTCCCTCTGAGGATGTTGGGAAGAAAGCCCA680.1004386807083881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)